Factsheet for GSMUA_Achr2P20470_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

plastid 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 4
golgi 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	74.27	74.87
Zm00001d006773_P001	Maize	cytosol	25.03	61.29
KRH08736	Soybean	endoplasmic reticulum	43.06	60.98
KRH08750	Soybean	cytosol	39.21	60.75
VIT_18s0166g00210.t01	Wine grape	cytosol	68.9	60.23
KRG91629	Soybean	cytosol	66.77	60.02
KRH35179	Soybean	cytosol	67.48	59.46
KRH70333	Soybean	cytosol	66.67	58.75
PGSC0003DMT400002081	Potato	cytosol	66.97	58.7
Solyc04g071040.2.1	Tomato	cytosol	66.87	58.61
Os01t0964800-01	Rice	mitochondrion	34.25	58.38
KXG34192	Sorghum	cytosol	52.89	57.24
GSMUA_Achr8P07850_001	Banana	cytosol	64.03	57.19
Zm00001d011805_P001	Maize	cytosol	52.48	56.8
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	61.4	56.22
HORVU1Hr1G002740.1	Barley	cytosol, mitochondrion, nucleus, plastid	51.57	56.12
KRH30227	Soybean	cytosol	25.63	56.1
CDY11586	Canola	cytosol	59.68	55.94
HORVU3Hr1G112690.2	Barley	cytosol, plastid	51.37	55.84
CDY47138	Canola	cytosol	59.17	55.78
TraesCS3A01G512900.1	Wheat	cytosol	51.47	55.76
TraesCS1B01G024400.1	Wheat	cytosol, mitochondrion, nucleus	51.17	55.68
EES18851	Sorghum	cytosol, plastid	51.67	55.68
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	51.27	55.67
Bra016214.1-P	Field mustard	cytosol	59.07	55.52
TraesCS1A01G020400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.96	55.46
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	51.37	55.29
TraesCS3B01G581600.2	Wheat	cytosol	50.96	55.15
TraesCS3D01G522600.2	Wheat	cytosol	48.33	54.89
Bra003698.1-P	Field mustard	mitochondrion	59.88	54.87
AT1G76950.1	Thale cress	cytosol	61.3	54.85
CDX88324	Canola	cytosol	58.66	54.57
CDX87557	Canola	cytosol	59.27	54.52
Bra015708.1-P	Field mustard	cytosol	59.27	54.47
Os05t0106700-00	Rice	mitochondrion	51.87	54.47
CDY48550	Canola	cytosol	53.8	54.18
CDX68076	Canola	cytosol	44.98	53.49
GSMUA_AchrUn_...	Banana	nucleus	61.8	52.91
KRH30228	Soybean	cytosol	20.47	49.63
CDY70949	Canola	cytosol	17.43	48.59
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	45.8	48.34
GSMUA_Achr4P00510_001	Banana	cytosol	44.07	45.27
GSMUA_Achr5P08220_001	Banana	cytosol	49.14	44.09
GSMUA_Achr1P02140_001	Banana	cytosol	35.36	39.08
GSMUA_Achr5P11650_001	Banana	cytosol	35.66	36.29
GSMUA_Achr7P20980_001	Banana	cytosol	44.98	30.56
GSMUA_Achr6P17690_001	Banana	cytosol	12.66	28.47
GSMUA_Achr3P19000_001	Banana	nucleus	12.36	27.17
GSMUA_Achr8P06920_001	Banana	cytosol	8.81	26.61
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.96	23.98
GSMUA_Achr10P...	Banana	mitochondrion	10.13	23.81
GSMUA_Achr5P12060_001	Banana	mitochondrion	10.84	23.67
GSMUA_Achr1P00100_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.55	23.17
GSMUA_Achr9P15560_001	Banana	cytosol	8.71	23.12
GSMUA_Achr10P...	Banana	cytosol	10.84	22.15
GSMUA_Achr9P02110_001	Banana	plastid	12.06	22.12
GSMUA_Achr6P29750_001	Banana	cytosol	8.61	21.41
GSMUA_AchrUn_...	Banana	cytosol, plastid	11.35	20.86
GSMUA_AchrUn_...	Banana	cytosol	10.74	19.89

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	InterPro:Brevis_radix_dom
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr2G20470_001	EnsemblPlants:GSMUA_Achr2P20470_001	EnsemblPlants:GSMUA_Achr2T20470_001	InterPro:IPR000408	InterPro:IPR009091
InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	UniProt:M0S9N8	PFAM:PF00415
PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	InterPro:PH-like_dom_sf	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF91	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	TMHMM:TMhelix
UniParc:UPI0002969E23	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Putative Probable E3 ubiquitin-protein ligase HERC2 [Source:GMGC_GENE;Acc:GSMUA_Achr2G20470_001]

Coordinates

chr2:-:20287028..20294071

Molecular Weight (calculated)

107771.0 Da

IEP (calculated)

8.675

GRAVY (calculated)

-0.316

Length

987 amino acids

Sequence
(BLAST)

001: MQTIIVLLVL ENIYIRSMNR LLDLLCIFIK SLYFSLTLHV FLKALLALKR GSHLLKYGRK GKPKFYPFRL SDDASSLIWL SSGGEKSLKL VSVSKIIPGQ
101: RTPVFKRYPC SEKDHLSFSL IYDNGTRSLD LICKDRFETE VWFAGLKALV SSGHVGRPKI DGWSDGGLYF DDLISKSPSE RSSGSILDSS SPDISYSIKT
201: SSVVSSENFV RLERSDVSNM LAKGASSDII RVSVSSAPST SSHGSVQDDC DALGDVYVWG EVIFLDVHHV ACGVRHAVLV TKQGEVFTWG EESGGRLGHG
301: VGADVVQPRL LEVSGPLEGL QVAYVNCGTW HTASITSTGK LLTFGDGTFG ALGHGSRESV TQPREVESLM GLKTIAVACG VWHTAAVVEV IVAQPGANAS
401: SGKLFTWGDG DKYRLGHGDK EPRLKPTCVA SLIDYNFHKL ACGHSLTVGL TTSGQVFTMG STVCGQLGNP QSDGKLPCLV EDKLVGESVG EVACGSYHVA
501: VLTIRGEVFT WGKGANGRLG HGDIEDRKTP TLVEALKDRA VKYIACGANF TAVICQHKWV SGAEQSQCSA CRQAFGFTRK RHNCYHCGLV HCHSCSSRKA
601: LRAALSPNPS KPYRVCDSCY VKLNNVLEFG GINKRNGLPR LTGEIRDRFE KAEMKSTRLV LPSNLDLMKD LDIKAARHGK KTDSLSFVRA AHASSLVQLK
701: DLALAGGIDL QGAAPRPLRT SMVQSVNPSR AVSPFSRKSS PPRSATPIPT TSGLSFSKSP TDTLKKTNEL LNQEVQKLRA QVDNLTERCE LQEVELQKLG
801: KKAQEATALA AEESAKSKAA KEVIKSLTSQ LKDMAELLPQ GVHKNGAIRS AGLSNGLDLH SDCQSLNSSE MEEDFSTGKR DSNAERSSSS SKADIDNKET
901: EHAEWIEQYE PGVYITLVAH RDGTRDLKRV RFSRRRFGEH QAESWWSENR ENVYERYNVR GSDRASSAVS RQSALRSEED YMHSSRA

Best Arabidopsis Sequence Match ( AT3G23270.2 )
(BLAST)

0001: MADPASCYIY HERDVDQALV VLKKGTQLLK YSRKGKPKFR AFRLSPDEKT LIWFSRGEEK GLKLFEVSRI VPGQRTAVFK RFLRPEKDHL SFSLLYNNRE
0101: RSLDLICKDK AETEVWFAAL KFLIEKSRNR RARSEIPEIH DSDTFSVGRQ SIDFVPSNIP RGRTSIDLGY QNNSDVGYER GNMLRPSTDG FRISVSSTPS
0201: CSSGGSGPDD IESLGDVYVW GEVWTEGILP DGTASNETVK TDVLTPRPLE SNVVLDVHQI VCGVRHVALV TRQGEVFTWG EEVGGRLGHG IQVDISRPKL
0301: VEFLALTNID FVACGEYHTC VVSTSGDLFS WGDGIHNVGL LGHGSDISHW IPKRVSGPLE GLQVLSVACG TWHSALATAN GKLFTFGDGA FGVLGHGNRE
0401: SVSYPKEVQS LNGLKTVKVA CSIWHTAAIV EVMGQTATSM SSRKLFTWGD GDKNRLGHGN KETYLLPTCV SSLIDYNFHK IACGHTFTVA LTTSGHVFTM
0501: GGTAHGQLGN SISDGKLPCL VQDRLVGEFV EEIACGAHHV AVLTSRSEVF TWGKGANGRL GHGDTEDKRT PTLVEALRDR HVKSLSCGSN FTSSICIHKW
0601: VSGADQSICS GCRQAFGFTR KRHNCYNCGL VHCHACSSKK ALKAALAPTP GKPHRVCDAC YSKLKAAESG YSSNVNRNVA TPGRSIDGSV RTDRETTRSS
0701: KVLLSANKNS VMSSSRPGFT PESSNARASQ VPSLQQLKDI AFPSSLSAIQ NAFKPVVAPT TTPPRTLVIG PSSPSPPPPP RSSSPYARRP SPPRTSGFSR
0801: SVIDSLRKTN EVMNQEMTKL HSQVKNLKQR CNNQGTEIER FQKAAKDASE LAARQSSKHK AATEALKSVA EQLKELKEKL PPEVSESEAF ESINSQAEAY
0901: LNANKVSETS PLTTSGQEQE TYQKTEEQVP SNSSITETSS SSRAPSTEAS SSRISGKESK EQFEPGVYVT YEVDMNGNKI FRRVRFSKKR FDEHQAEDWW
1001: TKNKDRLLKC YSSNSSSSSS SSNPTASDSP VAPQPPSDPS VPEQSNEKEP DSET

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.