Factsheet for GSMUA_Achr5P11650_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P02140_001	Banana	cytosol	74.95	81.41
CDX87986	Canola	cytosol	10.52	49.51
TraesCS6A01G261000.1	Wheat	cytosol	44.74	47.54
Zm00001d017641_P004	Maize	cytosol	41.13	46.34
TraesCS2D01G457000.1	Wheat	cytosol, nucleus, peroxisome	47.73	45.26
TraesCS2B01G478900.1	Wheat	cytosol, nucleus, peroxisome	48.04	45.2
TraesCS6D01G241800.1	Wheat	cytosol	49.28	45.05
TraesCS6B01G288400.1	Wheat	cytosol	49.28	44.8
HORVU6Hr1G066460.5	Barley	cytosol	49.07	44.61
VIT_04s0079g00290.t01	Wine grape	cytosol	45.98	44.38
Solyc02g036390.1.1	Tomato	cytosol	35.88	44.33
TraesCS2A01G456700.1	Wheat	cytosol, nucleus, peroxisome	47.94	44.2
Os04t0583700-00	Rice	cytosol	46.39	43.52
OQU85620	Sorghum	cytosol, mitochondrion, nucleus	47.73	43.15
KXG26989	Sorghum	cytosol	47.32	43.02
Zm00001d051479_P005	Maize	nucleus	46.6	42.01
PGSC0003DMT400043094	Potato	nucleus	46.39	41.82
KRG98005	Soybean	cytosol	46.08	41.78
KRH30884	Soybean	cytosol	46.08	41.62
CDY31624	Canola	cytosol	42.16	41.61
Zm00001d002544_P004	Maize	cytosol, endoplasmic reticulum, nucleus	47.22	41.26
AT1G65920.1	Thale cress	cytosol	42.78	41.25
CDX87989	Canola	cytosol	42.27	40.92
Bra038181.1-P	Field mustard	cytosol	42.16	40.82
HORVU2Hr1G104550.10	Barley	cytosol, nucleus, plastid	47.73	40.09
GSMUA_Achr4P00510_001	Banana	cytosol	38.14	38.5
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	37.01	38.4
GSMUA_Achr5P08220_001	Banana	cytosol	40.52	35.73
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	36.29	35.66
GSMUA_Achr8P07850_001	Banana	cytosol	38.04	33.39
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	31.75	31.46
GSMUA_AchrUn_...	Banana	nucleus	36.39	30.62
GSMUA_Achr6P17690_001	Banana	cytosol	13.3	29.39
GSMUA_Achr3P19000_001	Banana	nucleus	12.89	27.84
GSMUA_Achr7P20980_001	Banana	cytosol	38.76	25.88
GSMUA_Achr8P06920_001	Banana	cytosol	8.45	25.08
GSMUA_Achr10P...	Banana	mitochondrion	10.21	23.57
GSMUA_Achr10P...	Banana	cytosol	11.24	22.57
GSMUA_Achr6P29750_001	Banana	cytosol	9.07	22.17
GSMUA_Achr1P00100_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.24	22.15
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.13	21.95
Solyc02g081250.1.1	Tomato	cytosol	45.77	21.27
GSMUA_Achr9P02110_001	Banana	plastid	11.75	21.19
GSMUA_AchrUn_...	Banana	cytosol, plastid	11.65	21.04
GSMUA_Achr9P15560_001	Banana	cytosol	8.04	20.97
GSMUA_Achr5P12060_001	Banana	mitochondrion	9.59	20.58
GSMUA_AchrUn_...	Banana	cytosol	10.62	19.32

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:Brevis_radix_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr5G11650_001	EnsemblPlants:GSMUA_Achr5P11650_001	EnsemblPlants:GSMUA_Achr5T11650_001	InterPro:IPR000408
InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455
UniProt:M0SXP4	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF16457	InterPro:PH-like_dom_sf
InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514
PANTHER:PTHR22870	PANTHER:PTHR22870:SF177	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729
SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI00029561CC	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Putative Probable E3 ubiquitin-protein ligase HERC2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G11650_001]

Coordinates

chr5:+:8326278..8333568

Molecular Weight (calculated)

107922.0 Da

IEP (calculated)

9.406

GRAVY (calculated)

-0.470

Length

970 amino acids

Sequence
(BLAST)

001: MAENFGRRTP SVREVEQAIT ALKKGAHLLK CGRRGKPKFC PFRLSTDEKS LIWYSGEKEK HLNLNSVSKL VPGQQTANFL RQNQADKKIQ SFSLVYENGQ
101: RSLDLICKDK EQAESWCLGL TALVSTSHQP RSLAHVRSSR WAHSCVNSPA KYAATNHRLG ILQGSAKLAK VWRHPMISLL QRTLSDIQSY LDKILPRLPH
201: VVSYGDEDKI ESNLSKGQRM HPVSKLSSSD HESPKLYVND GLKDVFIWGK GVGGVLGGGI DSSLPRLLDS TRALDVRNVS CGENHAALVT KQGEVFCWGL
301: ENGGRLGHKV NMDVPCPKLW FPHTISGPLD DICISRVACG EWHTAIVSSS GQLFTYGDGT FGVLGHGNVQ SLSRPKEVES LKGLRVKSVA CGPWHTAAVV
401: EIMVGRVKGN TPGGKLFTWG DNDKGRLGHA DKDRKLTPTC VASLVDCDFV QVTCGTTLTV ALTVTGIVFT MGSSANGQLG NPQAEDVSIT RVEGLLKTEY
501: VKEISAGSFH VTVLTTKGKV YAWGRGGNGQ LGLGDNKDRN SPTPVESLED RHVESIACGS NFTVITCLHK FISSKDQSIC TGCRMVFGFA RKKHNCYNCG
601: FMFCHHCSSK KAMNAALAPS RCKRYRVCNS CFTQLQKISD TRMNTETSTP RPLLLTTEET KPVEVDAESI REKRHNQHLS SPLITIRRWG HVPRPLQFLE
701: HAKENSLKVV PISGQENSDI MLPKASSLRK DLDSVDKVLR EELLRLQTEL HDNLQLIQPQ AMSLTQKCQS RSQKLQQCKR KIEETWLLAK DEAEKCKAAN
801: AVIKILTSQQ MNALTEKISS RRQTSRSTME AVSTCHETKF PVPEGEKLVS SSRHQNKDVN ESIKHQTCTS SSNDAPLAAT SAKDCKPKES KDEWVEQVEV
901: GVYITFITLP NGQKGLKRVR FSRKHFSEKE AEKWWEENQR KLYYSKLNEN IRVPLMDIGT VFWTQSYGNL

Best Arabidopsis Sequence Match ( AT1G65920.1 )
(BLAST)

0001: MGEQQISVTV PRDRTDEQAI LALKKGAQLL KCRRRGNPKF CPFKLSMDEK YLIWYSGEEE RQLRLSSVIT IVRGQITPNF QKQAQSDRKE QSFSLIYANG
0101: EHTLDLICKD KAQADSWFKG LRAVITKHHN IRNSVNHRSS RGAQSCINSP AGFMRRKQNL GLLEETPDVT QIRSLCGSPS TLLEERCLSN GLSCSSDSFA
0201: ESDALGPVSS YYETDYDFRN SDCDRSTGSE LCRFSSQRFA ASPPLSIITQ PVTRSNVLKD IMIWGAITGL IDGSKNQNDA LSPKLLESAT MFDVQSISLG
0301: AKHAALVTRQ GEVFCWGNGN SGKLGLKVNI DIDHPKRVES LEDVAVRSVA CSDHQTCAVT ESGELYLWGI DGGTIEQSGS QFLTRKISDV LGGSLTVLSV
0401: ACGAWHTAIV TSSGQLFTYG SGTFGVLGHG SLESVTKPKE VESLRRMKVI SVSCGPWHTA AIVETANDRK FYNAKSCGKL FTWGDGDKGR LGHADSKRKL
0501: VPTCVTELID HDFIKVSCGW TLTVALSISG TVYTMGSSIH GQLGCPRAKD KSVNVVLGNL TRQFVKDIAS GSHHVAVLTS FGNVYTWGKG MNGQLGLGDV
0601: RDRNSPVLVE PLGDRLVESI ACGLNLTAAI CLHKEISLND QTACSSCKSA FGFTRRKHNC YNCGLLFCNA CSSKKAVNAS LAPNKSKLSR VCDSCFDHLW
0701: SITEFSRNVK MDNHTPRMQM VTRRVSEDLT EKQSENEMQN LPQANRSSDG QPRWGQVSGP SLFRFDKIST SSSLNLSVSA RRTSSTKIST SSESNKILTE
0801: EIERLKAVIK NLQRQCELGN EKMEECQQEL DKTWEVAKEE AEKSKAAKEI IKALASKLQA NKEKPSNPLK TGIACNPSQV SPIFDDSMSI PYLTPITTAR
0901: SQHETKQHVE KCVTKSSNRD SNIKLLVDAS PAITRTGYLQ NETQDSSAEQ VEQYEPGVYI TFTALPCGQK TLKRVRFSRK RFSEKEAQRW WEEKQVLVYN
1001: KYDAEI

Arabidopsis Description

F12P19.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.