CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038181.1-P	Field mustard	cytosol	98.58	96.71
CDX87989	Canola	cytosol	96.03	94.21
CDX87986	Canola	cytosol	18.82	89.81
AT1G65920.1	Thale cress	cytosol	84.33	82.41
VIT_04s0079g00290.t01	Wine grape	cytosol	49.85	48.76
Solyc02g036390.1.1	Tomato	cytosol	37.54	47.01
KRG98005	Soybean	cytosol	50.66	46.54
KRH30884	Soybean	cytosol	50.46	46.18
PGSC0003DMT400043094	Potato	nucleus	49.85	45.54
GSMUA_Achr1P02140_001	Banana	cytosol	40.69	44.79
GSMUA_Achr5P11650_001	Banana	cytosol	41.61	42.16
Zm00001d017641_P004	Maize	cytosol	36.22	41.35
TraesCS6A01G261000.1	Wheat	cytosol	36.93	39.76
TraesCS2B01G478900.1	Wheat	cytosol, nucleus, peroxisome	41.1	39.19
TraesCS2D01G457000.1	Wheat	cytosol, nucleus, peroxisome	40.59	39.0
TraesCS2A01G456700.1	Wheat	cytosol, nucleus, peroxisome	41.1	38.4
CDY66504	Canola	cytosol	31.64	37.7
TraesCS6D01G241800.1	Wheat	cytosol	40.59	37.61
TraesCS6B01G288400.1	Wheat	cytosol	40.59	37.39
Os04t0583700-00	Rice	cytosol	38.96	37.04
KXG26989	Sorghum	cytosol	40.18	37.02
HORVU6Hr1G066460.5	Barley	cytosol	39.98	36.83
OQU85620	Sorghum	cytosol, mitochondrion, nucleus	39.57	36.25
CDY70949	Canola	cytosol	13.02	36.16
Zm00001d002544_P004	Maize	cytosol, endoplasmic reticulum, nucleus	40.79	36.13
Zm00001d051479_P005	Maize	nucleus	39.47	36.06
CDX97187	Canola	nucleus	38.76	36.01
CDX69686	Canola	nucleus	39.17	35.98
CDX85690	Canola	nucleus	38.66	35.51
CDX88324	Canola	cytosol	38.05	35.25
CDX91165	Canola	nucleus	38.45	35.23
CDY47138	Canola	cytosol	37.44	35.15
HORVU2Hr1G104550.10	Barley	cytosol, nucleus, plastid	40.9	34.81
CDY11586	Canola	cytosol	37.23	34.76
CDX87557	Canola	cytosol	37.84	34.67
CDX92532	Canola	nucleus	38.96	34.38
CDX88891	Canola	cytosol, mitochondrion, nucleus	39.57	34.27
CDY48550	Canola	cytosol	33.88	33.98
CDX70876	Canola	cytosol	38.45	33.9
CDY13998	Canola	nucleus	38.45	33.87
CDX85076	Canola	cytosol	35.3	33.43
CDY28580	Canola	plasma membrane	34.79	32.76
CDY44086	Canola	plasma membrane, vacuole	34.89	32.6
CDY12764	Canola	cytosol	34.38	32.25
CDY31347	Canola	cytosol	14.24	32.11
CDY43762	Canola	cytosol	13.84	31.78
CDX68076	Canola	cytosol	26.75	31.69
CDX81201	Canola	cytosol	14.14	31.59
CDY60046	Canola	cytosol	14.34	31.47
CDX84451	Canola	cytosol	14.14	31.17
CDX77534	Canola	cytosol	35.1	31.05
CDY39843	Canola	cytosol	12.72	30.94
CDY21795	Canola	cytosol	30.01	30.83
CDX77871	Canola	cytosol	29.7	30.77
CDY49416	Canola	cytosol	34.28	30.12
CDY46423	Canola	cytosol	10.99	28.5
CDY69131	Canola	cytosol	9.26	28.35
CDY16215	Canola	cytosol	10.88	27.72
CDY43240	Canola	cytosol	12.61	26.27
CDY57523	Canola	cytosol	12.51	26.11
CDY44785	Canola	mitochondrion	11.19	25.4
CDY40735	Canola	mitochondrion	11.29	25.4
CDY02190	Canola	mitochondrion	11.29	25.06
CDY51633	Canola	mitochondrion	11.29	25.0
CDY34733	Canola	cytosol	8.34	24.48
CDX96062	Canola	plastid	12.61	23.94
CDY01845	Canola	plastid	12.51	23.79
Solyc02g081250.1.1	Tomato	cytosol	50.25	23.67
CDY28863	Canola	cytosol	12.31	23.27
CDX69479	Canola	cytosol	9.36	23.17
CDY26488	Canola	cytosol	9.36	23.12
CDY56518	Canola	cytosol, plastid	12.21	23.08
CDX97668	Canola	cytosol	11.19	23.06
CDY56827	Canola	cytosol	11.19	23.06
CDY04192	Canola	cytosol	11.09	22.15
CDY39172	Canola	cytosol	10.99	21.95
CDY13609	Canola	cytosol	11.39	21.17
CDX99731	Canola	cytosol, plastid	11.5	21.12
CDX83586	Canola	cytosol, plastid	11.29	20.98
CDY40988	Canola	cytosol, plastid	10.88	19.49
CDY14709	Canola	nucleus	11.19	15.92
CDY21840	Canola	endoplasmic reticulum, extracellular	11.8	14.04
CDY20113	Canola	endoplasmic reticulum, extracellular	11.7	13.94

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078H2I6	UniProt:A0A078H2I6
InterPro:Brevis_radix_dom	EnsemblPlants:CDY31624	ProteinID:CDY31624	ProteinID:CDY31624.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00050175001	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091
InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	PFAM:PF00415	PFAM:PF01363
PFAM:PF08381	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF177	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0004EF0685
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

BnaA06g20390DBnaA06g20390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2I6]

Coordinates

chrLK032276:+:69598..73702

Molecular Weight (calculated)

108250.0 Da

IEP (calculated)

8.762

GRAVY (calculated)

-0.428

Length

983 amino acids

Sequence
(BLAST)

001: MGEQHISATV PRDRTDEQAI LALKKGAQLL KCRRRGNPKF CPFKLSMDEK YLIWYSGQDE RQLRLSSVIT IVRGQITPKF EKQAQPDRKE QSFSLVYANG
101: EYTLDLICKD KAQADSWFKG LRAVITKHHN ARSSVNLRTS RGAQSCINSP AGFIRRKQNL GLVEETPDFT QIRSLCASPS TLLEERCLWL SGSSDSFYSV
201: ESAGSDGFGP VCPYYDQTGS ELSKKHSSQR FYVSPPHTVT QPTARSNVLK DVMIWGATRG LIEGSKNQND ALSPQLLESA TMFDVQSISL GAKHAALVTR
301: QGEVFCWGNG NSGKLGLKVN LDIDHPKRVE SLEGVAVGSV ACSDHQTCAV TESGELYLWG IDGGTTGESG RQFLTRKIAD LFGGSLRVHS VACGAWHTAI
401: VTFSGQLYTY GSGTFGVLGH GSLESVTKPK EVESLKRMKV VSVSCGPWHT AAIVETSTKS CGKLFTWGDG DKGRLGHVDS KRKLVPTCVS ELIDQDFVKV
501: SCGWTLTVAL SNRGTVYTMG SSIHGQLGCP RAKDKSINTV LGNLTRQFVK EIACGSYHVA VLTSFGNVYT WGKGANGQLG LGDVRDRNSP VLVESLGDRL
601: VESVACGLSL TAAICLHKDI SLTDQSACSS CKSAFGFTRK KHNCYNCGLL FCNACSSKKA VNASLAPNKG KLSRVCDSCF NHLWRITEFS NKVKMQLVTN
701: ARRVSDEWTE TESQNQIQNI PQPNCSSDGQ PRWGQVSAPS LFLFDKMSLS LTSPEDISVS SRRPSSTKIS TSSETNKIFI DEIERLKAEV RNLQKQCELG
801: NEKIEECQRE FEKTSQVAKE EAEKAKVAKE IIKAMASRLQ TNKEKPNNPK TGIACNPSKV SPIFDDDSVS APYLTPITTT CSQSKDKQIV EKCSSRESNI
901: RLLVNASPAI TRTGHMQNGT QESTAEQVEQ YEPGVYITFT ALPCGQKTLK RVRFSRKRFS EKEAQRWWEE KQVLVYNKYD AEA

Best Arabidopsis Sequence Match ( AT1G65920.1 )
(BLAST)

0001: MGEQQISVTV PRDRTDEQAI LALKKGAQLL KCRRRGNPKF CPFKLSMDEK YLIWYSGEEE RQLRLSSVIT IVRGQITPNF QKQAQSDRKE QSFSLIYANG
0101: EHTLDLICKD KAQADSWFKG LRAVITKHHN IRNSVNHRSS RGAQSCINSP AGFMRRKQNL GLLEETPDVT QIRSLCGSPS TLLEERCLSN GLSCSSDSFA
0201: ESDALGPVSS YYETDYDFRN SDCDRSTGSE LCRFSSQRFA ASPPLSIITQ PVTRSNVLKD IMIWGAITGL IDGSKNQNDA LSPKLLESAT MFDVQSISLG
0301: AKHAALVTRQ GEVFCWGNGN SGKLGLKVNI DIDHPKRVES LEDVAVRSVA CSDHQTCAVT ESGELYLWGI DGGTIEQSGS QFLTRKISDV LGGSLTVLSV
0401: ACGAWHTAIV TSSGQLFTYG SGTFGVLGHG SLESVTKPKE VESLRRMKVI SVSCGPWHTA AIVETANDRK FYNAKSCGKL FTWGDGDKGR LGHADSKRKL
0501: VPTCVTELID HDFIKVSCGW TLTVALSISG TVYTMGSSIH GQLGCPRAKD KSVNVVLGNL TRQFVKDIAS GSHHVAVLTS FGNVYTWGKG MNGQLGLGDV
0601: RDRNSPVLVE PLGDRLVESI ACGLNLTAAI CLHKEISLND QTACSSCKSA FGFTRRKHNC YNCGLLFCNA CSSKKAVNAS LAPNKSKLSR VCDSCFDHLW
0701: SITEFSRNVK MDNHTPRMQM VTRRVSEDLT EKQSENEMQN LPQANRSSDG QPRWGQVSGP SLFRFDKIST SSSLNLSVSA RRTSSTKIST SSESNKILTE
0801: EIERLKAVIK NLQRQCELGN EKMEECQQEL DKTWEVAKEE AEKSKAAKEI IKALASKLQA NKEKPSNPLK TGIACNPSQV SPIFDDSMSI PYLTPITTAR
0901: SQHETKQHVE KCVTKSSNRD SNIKLLVDAS PAITRTGYLQ NETQDSSAEQ VEQYEPGVYI TFTALPCGQK TLKRVRFSRK RFSEKEAQRW WEEKQVLVYN
1001: KYDAEI

Arabidopsis Description

F12P19.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.