CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013002.1-P	Field mustard	mitochondrion	99.55	99.55
CDY51633	Canola	mitochondrion	98.19	97.97
AT5G60870.2	Thale cress	mitochondrion	91.42	89.6
Solyc07g042980.2.1	Tomato	cytosol	39.05	71.19
GSMUA_Achr8P06920_001	Banana	cytosol	49.89	67.58
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	49.66	66.87
KRH46563	Soybean	mitochondrion	66.37	66.22
HORVU5Hr1G089510.1	Barley	cytosol	53.5	65.83
Zm00001d021372_P001	Maize	mitochondrion	62.98	64.58
EER97183	Sorghum	mitochondrion	62.98	64.58
Os09t0560450-01	Rice	mitochondrion	63.66	64.53
TraesCS5B01G366300.1	Wheat	mitochondrion	62.3	63.01
TraesCS5D01G373300.1	Wheat	mitochondrion	62.3	63.01
TraesCS5A01G364400.2	Wheat	mitochondrion	61.63	62.33
Solyc07g042970.2.1	Tomato	mitochondrion	30.02	55.19
Os04t0226400-01	Rice	plastid	21.44	43.78
CDX69479	Canola	cytosol	22.12	24.69
CDY26488	Canola	cytosol	21.67	24.12
CDY34733	Canola	cytosol	17.61	23.28
CDY43762	Canola	cytosol	22.35	23.13
CDY39843	Canola	cytosol	20.77	22.77
CDY31347	Canola	cytosol	22.35	22.71
CDX81201	Canola	cytosol	22.12	22.27
CDY46423	Canola	cytosol	18.96	22.16
CDY60046	Canola	cytosol	22.35	22.1
CDX84451	Canola	cytosol	22.12	21.97
CDY69131	Canola	cytosol	15.8	21.81
CDY16215	Canola	cytosol	18.74	21.5
CDY44785	Canola	mitochondrion	20.09	20.55
CDY40735	Canola	mitochondrion	20.09	20.37
CDY57523	Canola	cytosol	19.64	18.47
CDY43240	Canola	cytosol	19.64	18.43
CDY56827	Canola	cytosol	18.28	16.98
CDX97668	Canola	cytosol	18.28	16.98
CDY04192	Canola	cytosol	18.28	16.46
CDY39172	Canola	cytosol	18.28	16.46
CDX99731	Canola	cytosol, plastid	18.96	15.7
CDX87986	Canola	cytosol	7.0	15.05
CDY40988	Canola	cytosol, plastid	18.51	14.94
CDX83586	Canola	cytosol, plastid	17.83	14.93
CDY13609	Canola	cytosol	17.61	14.74
CDX96062	Canola	plastid	16.48	14.09
CDY01845	Canola	plastid	16.25	13.93
CDY28863	Canola	cytosol	16.25	13.85
CDY56518	Canola	cytosol, plastid	16.03	13.65
CDY66504	Canola	cytosol	25.06	13.45
CDX77871	Canola	cytosol	25.51	11.91
CDY14709	Canola	nucleus	18.51	11.87
CDX97187	Canola	nucleus	28.22	11.81
CDX69686	Canola	nucleus	28.44	11.78
CDX91165	Canola	nucleus	28.44	11.74
CDY44086	Canola	plasma membrane, vacuole	27.77	11.69
CDY28580	Canola	plasma membrane	27.54	11.69
CDX85690	Canola	nucleus	28.22	11.68
CDY21795	Canola	cytosol	25.06	11.6
CDY48550	Canola	cytosol	25.06	11.33
CDY70949	Canola	cytosol	9.03	11.3
CDY31624	Canola	cytosol	25.06	11.29
CDX70876	Canola	cytosol	28.22	11.21
CDX92532	Canola	nucleus	27.99	11.13
CDY13998	Canola	nucleus	27.99	11.11
CDX88891	Canola	cytosol, mitochondrion, nucleus	28.44	11.1
CDX87989	Canola	cytosol	24.83	10.98
CDX88324	Canola	cytosol	25.96	10.84
CDY12764	Canola	cytosol	25.51	10.78
CDY47138	Canola	cytosol	25.28	10.7
CDY11586	Canola	cytosol	25.28	10.64
CDX87557	Canola	cytosol	25.73	10.62
CDY20113	Canola	endoplasmic reticulum, extracellular	19.64	10.55
CDX85076	Canola	cytosol	24.61	10.5
CDY49416	Canola	cytosol	25.51	10.1
CDX77534	Canola	cytosol	25.06	9.99
CDY21840	Canola	endoplasmic reticulum, extracellular	18.51	9.93
CDX68076	Canola	cytosol	14.45	7.71

Protein Annotations

EnsemblPlants:CDY02190	EnsemblPlantsGene:GSBRNA2T00113601001	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PFAM:PF00415	PFscan:PS50012	PRINTS:PR00633	ProteinID:CDY02190	ProteinID:CDY02190.1
ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI0004EE776D	MapMan:16.12.2.2.2	:

Description

BnaA03g39770D

Coordinates

chrLK031932:+:619929..622060

Molecular Weight (calculated)

46992.5 Da

IEP (calculated)

6.647

GRAVY (calculated)

-0.211

Length

443 amino acids

Sequence
(BLAST)

001: MAALSHRLRS NFTRRFSSTR NTQRSGGSTK VPTLYTSPEI DSDSTTLQLL SWGRGASGQL GGGIEEIRMY PSPVANLLLR PDQSFSLAQT PGRIDNGSGF
101: RVGVSSGLFH SGLTVDGDLW VWGKGDGGRL GFGQEDSVFV PKLNPRFEER SIRCVALGGL HSVALTHKGD VFTWGYGGFG ALGHSVYTRE LVPRRVEGSW
201: DCKISAIATS GTHTAAITES GELYMWGREE GDGRLGLGPG RGPNEGGGLS VPSKVKALTV PVASVSCGGF FTMALTQEGQ LWNWGANSNY ELGRGDNLGG
301: WEPMPVPSLE GVRITQIACG GYHSLALTEE GKVLSWGHGG HGQLGNASLR NQQVPTEIEA LADKKIVFIA CGGSSSAAIT DGGELWMWGN AKDFQLGVPG
401: LPEIQTSPVQ VNFLTEEDEL GPHKVISVSI GASHALCLVS RSH

Best Arabidopsis Sequence Match ( AT5G60870.1 )
(BLAST)

001: MAALSHRLRS FTRRFSSTRT TQRSGGGANT KVPILYTSPD IDSDPVTLQL FSWGRGASGQ LGGGIEEIRM YPSPVANLLF RSDQSFSLAQ TPGRIDADSS
101: SFRIGISCGL FHSGLTIDGD LWIWGKGDGG RLGFGQENSV FVPNLNPLFE EHSIRCIALG GLHSVALTHQ GDVFTWGYGG FGALGHKVYT RELVPRRVDD
201: SWDCKISAIA TSGTHTAAIT ESGELYMWGR EEGDGRLGLG PGRGPNEGGG LSVPSKVKAL TVPVASVSCG GFFTMALTKE GQLWNWGANS NYELGRGDNL
301: GGWEPMPVPS LEGVRITQIA CGGYHSLALT EEGKVLSWGH GGHGQLGSSS LRNQKVPTEI EALADKKIVF IASGGSSSAA ITDGGELWMW GNAKDFQLGV
401: PGLPEIQTTP VEVNFLTEED ECQPHKVISI SIGASHALCL VSRSP

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:TAIR;Acc:AT5G60870]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.