Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021435.1-P | Field mustard | cytosol | 99.4 | 84.95 |
| AT3G02510.1 | Thale cress | cytosol | 95.82 | 81.68 |
| CDX69479 | Canola | cytosol | 88.96 | 75.06 |
| CDY26488 | Canola | cytosol | 88.96 | 74.87 |
| GSMUA_Achr9P15560_001 | Banana | cytosol | 78.21 | 70.43 |
| KRG93861 | Soybean | nucleus | 82.39 | 69.87 |
| PGSC0003DMT400032945 | Potato | extracellular | 81.19 | 69.57 |
| Solyc02g085780.2.1 | Tomato | cytosol | 80.6 | 69.23 |
| VIT_14s0006g03240.t01 | Wine grape | cytosol | 80.0 | 67.85 |
| TraesCS7D01G282600.1 | Wheat | cytosol | 74.33 | 66.05 |
| Zm00001d050380_P004 | Maize | cytosol | 75.82 | 65.3 |
| TraesCS7B01G200200.1 | Wheat | cytosol | 74.33 | 64.01 |
| KXG25196 | Sorghum | cytosol | 74.63 | 63.94 |
| TraesCS7A01G284800.1 | Wheat | cytosol | 74.33 | 62.41 |
| Zm00001d032229_P002 | Maize | mitochondrion | 75.22 | 60.14 |
| HORVU7Hr1G062090.6 | Barley | cytosol | 74.03 | 59.9 |
| CDY46423 | Canola | cytosol | 25.37 | 22.43 |
| CDY43762 | Canola | cytosol | 28.06 | 21.96 |
| CDX81201 | Canola | cytosol | 28.06 | 21.36 |
| CDY16215 | Canola | cytosol | 24.48 | 21.24 |
| CDY69131 | Canola | cytosol | 20.3 | 21.18 |
| CDY31347 | Canola | cytosol | 27.46 | 21.1 |
| CDX84451 | Canola | cytosol | 28.06 | 21.08 |
| CDY60046 | Canola | cytosol | 28.06 | 20.98 |
| CDY39843 | Canola | cytosol | 24.48 | 20.3 |
| CDY44785 | Canola | mitochondrion | 25.67 | 19.86 |
| CDY40735 | Canola | mitochondrion | 25.67 | 19.68 |
| CDY04192 | Canola | cytosol | 25.97 | 17.68 |
| CDY02190 | Canola | mitochondrion | 23.28 | 17.61 |
| CDY51633 | Canola | mitochondrion | 23.28 | 17.57 |
| CDY39172 | Canola | cytosol | 25.67 | 17.48 |
| CDY56827 | Canola | cytosol | 24.48 | 17.19 |
| CDX97668 | Canola | cytosol | 24.18 | 16.98 |
| CDY57523 | Canola | cytosol | 23.58 | 16.77 |
| CDY43240 | Canola | cytosol | 23.58 | 16.74 |
| CDX83586 | Canola | cytosol, plastid | 25.07 | 15.88 |
| CDY13609 | Canola | cytosol | 25.07 | 15.88 |
| CDY28863 | Canola | cytosol | 24.48 | 15.77 |
| CDY01845 | Canola | plastid | 24.18 | 15.67 |
| CDX96062 | Canola | plastid | 24.18 | 15.64 |
| CDY56518 | Canola | cytosol, plastid | 24.18 | 15.58 |
| CDX99731 | Canola | cytosol, plastid | 24.78 | 15.51 |
| CDY40988 | Canola | cytosol, plastid | 24.48 | 14.94 |
| CDX87986 | Canola | cytosol | 8.36 | 13.59 |
| CDY14709 | Canola | nucleus | 24.78 | 12.01 |
| CDY66504 | Canola | cytosol | 27.76 | 11.27 |
| CDY48550 | Canola | cytosol | 28.66 | 9.8 |
| CDY20113 | Canola | endoplasmic reticulum, extracellular | 23.88 | 9.7 |
| CDY21840 | Canola | endoplasmic reticulum, extracellular | 23.58 | 9.56 |
| CDX97187 | Canola | nucleus | 29.55 | 9.36 |
| CDX85690 | Canola | nucleus | 29.85 | 9.35 |
| CDX91165 | Canola | nucleus | 29.85 | 9.32 |
| CDX69686 | Canola | nucleus | 29.25 | 9.16 |
| CDX88324 | Canola | cytosol | 28.96 | 9.14 |
| CDX87557 | Canola | cytosol | 28.66 | 8.95 |
| CDY47138 | Canola | cytosol | 27.76 | 8.88 |
| CDX85076 | Canola | cytosol | 27.46 | 8.86 |
| CDY11586 | Canola | cytosol | 27.76 | 8.83 |
| CDY12764 | Canola | cytosol | 27.16 | 8.68 |
| CDX88891 | Canola | cytosol, mitochondrion, nucleus | 29.25 | 8.63 |
| CDX92532 | Canola | nucleus | 28.66 | 8.62 |
| CDY13998 | Canola | nucleus | 28.66 | 8.6 |
| CDX77871 | Canola | cytosol | 24.18 | 8.54 |
| CDY44086 | Canola | plasma membrane, vacuole | 26.57 | 8.46 |
| CDY28580 | Canola | plasma membrane | 26.27 | 8.43 |
| CDY21795 | Canola | cytosol | 23.88 | 8.36 |
| CDY31624 | Canola | cytosol | 24.48 | 8.34 |
| CDX77534 | Canola | cytosol | 27.46 | 8.28 |
| CDX87989 | Canola | cytosol | 24.48 | 8.18 |
| CDY49416 | Canola | cytosol | 27.16 | 8.13 |
| CDX70876 | Canola | cytosol | 26.87 | 8.07 |
| CDY70949 | Canola | cytosol | 5.97 | 5.65 |
| CDX68076 | Canola | cytosol | 9.55 | 3.86 |
| Os02t0684900-01 | Rice | cytosol | 0.3 | 0.23 |
| Os09t0560500-01 | Rice | mitochondrion, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY34733 | EnsemblPlantsGene:GSBRNA2T00057266001 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF206 | PFAM:PF00415 | PFscan:PS50012 | PRINTS:PR00633 |
| ProteinID:CDY34733 | ProteinID:CDY34733.1 | ScanProsite:PS00626 | SEG:seg | SUPFAM:SSF50985 | UniParc:UPI0004EE05A8 |
| UniProt:A0A078HD52 | MapMan:35.1 | : | : | : | : |
Description
BnaA01g32920DBnaA01g32920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HD52]
Coordinates
chrLK032340:-:371857..373766
Molecular Weight (calculated)
36386.1 Da
IEP (calculated)
6.648
GRAVY (calculated)
-0.442
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MFTWGWNQKG TLGHPPETKT ENIPSRVKAL ANVKITQAAI GGWHCLAVDD QGRAYAWGGN EYGQCGEEPL KDEMGRPVRR DIVIPKRCAP KLTVRQVAAG
101: GTHSVVLTRD GHVWTWGQPW PPGDIKQIFV PVRVQGLENV RLIAVGAFHN LALEEDGRLM AWGNNEYGQL GTGDTQPTPH PVPIQGLDGL TLVDIAAGGW
201: HSTALTDKGE VYGWGRGEHG RLGFGDNDKS SKMVPQKVNL LADEDIIQVS CGGTHSVALT RDGRIFSFGR GDHGRLGYGR KVTTGQPLEL PIKIPPPEGS
301: LNHADEEEEG KWLATSIACG GRHTLAIVEW KSDDI
101: GTHSVVLTRD GHVWTWGQPW PPGDIKQIFV PVRVQGLENV RLIAVGAFHN LALEEDGRLM AWGNNEYGQL GTGDTQPTPH PVPIQGLDGL TLVDIAAGGW
201: HSTALTDKGE VYGWGRGEHG RLGFGDNDKS SKMVPQKVNL LADEDIIQVS CGGTHSVALT RDGRIFSFGR GDHGRLGYGR KVTTGQPLEL PIKIPPPEGS
301: LNHADEEEEG KWLATSIACG GRHTLAIVEW KSDDI
001: MVTATSIIAW GSGEDGQLGI GTNEEKEWAC VVEALEPYSV RSVVSGSRNS LAICDDGTMF TWGWNQRGTL GHQPETKTEN IPSRVKALAN VKITQAAIGG
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPLKD EMGRPVRRDI VIPKRCAPKL TVRQVAAGGT HSVVLTREGH VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LEEDGRLLAW GNNEYGQLGT GDTQPTSHPV PVQGLDDLTL VDIAAGGWHS TALTDKGEVY GWGRGEHGRL GLGDNDKSSK MVPQKVNLLA
301: EEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI KIPPPEGSFN HTDEEEEGKW SAKSIACGGR HTLAIVEWKS DDI
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPLKD EMGRPVRRDI VIPKRCAPKL TVRQVAAGGT HSVVLTREGH VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LEEDGRLLAW GNNEYGQLGT GDTQPTSHPV PVQGLDDLTL VDIAAGGWHS TALTDKGEVY GWGRGEHGRL GLGDNDKSSK MVPQKVNLLA
301: EEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI KIPPPEGSFN HTDEEEEGKW SAKSIACGGR HTLAIVEWKS DDI
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q0WSJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.