Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g085780.2.1 | Tomato | cytosol | 85.32 | 86.41 |
| PGSC0003DMT400032945 | Potato | extracellular | 84.81 | 85.68 |
| KRG93861 | Soybean | nucleus | 85.32 | 85.32 |
| GSMUA_Achr9P15560_001 | Banana | cytosol | 77.47 | 82.26 |
| Zm00001d050380_P004 | Maize | cytosol | 79.75 | 80.98 |
| CDY34733 | Canola | cytosol | 67.85 | 80.0 |
| AT3G02510.1 | Thale cress | cytosol | 79.49 | 79.9 |
| Bra008654.1-P | Field mustard | cytosol | 79.75 | 79.35 |
| AT5G16040.1 | Thale cress | cytosol | 79.49 | 79.29 |
| CDX69479 | Canola | cytosol | 79.24 | 78.84 |
| TraesCS7D01G282600.1 | Wheat | cytosol | 75.19 | 78.78 |
| KXG25196 | Sorghum | cytosol | 77.97 | 78.77 |
| Bra021435.1-P | Field mustard | cytosol | 77.97 | 78.57 |
| CDY26488 | Canola | cytosol | 78.99 | 78.39 |
| TraesCS7B01G200200.1 | Wheat | cytosol | 76.96 | 78.15 |
| TraesCS7A01G284800.1 | Wheat | cytosol | 76.46 | 75.69 |
| Zm00001d032229_P002 | Maize | mitochondrion | 78.23 | 73.75 |
| HORVU7Hr1G062090.6 | Barley | cytosol | 75.95 | 72.46 |
| VIT_01s0026g01520.t01 | Wine grape | cytosol | 25.06 | 25.0 |
| VIT_07s0031g02560.t01 | Wine grape | cytosol | 26.58 | 23.6 |
| VIT_07s0031g02850.t01 | Wine grape | mitochondrion | 24.81 | 23.33 |
| VIT_19s0014g03080.t01 | Wine grape | cytosol | 25.06 | 20.12 |
| VIT_14s0083g01020.t01 | Wine grape | cytosol | 24.3 | 20.08 |
| VIT_03s0017g02290.t01 | Wine grape | endoplasmic reticulum, golgi | 16.46 | 19.76 |
| VIT_12s0057g00540.t01 | Wine grape | cytosol, mitochondrion | 9.11 | 19.35 |
| VIT_01s0137g00230.t01 | Wine grape | cytosol | 25.32 | 18.73 |
| VIT_17s0000g05980.t01 | Wine grape | endoplasmic reticulum | 21.77 | 12.45 |
| VIT_01s0026g02170.t01 | Wine grape | cytosol | 27.85 | 12.11 |
| VIT_05s0049g01140.t01 | Wine grape | cytosol | 27.85 | 10.37 |
| VIT_06s0009g03550.t01 | Wine grape | nucleus | 28.86 | 10.3 |
| VIT_13s0067g03380.t01 | Wine grape | endoplasmic reticulum, extracellular | 27.85 | 10.02 |
| VIT_18s0166g00210.t01 | Wine grape | cytosol | 27.34 | 9.57 |
| VIT_04s0079g00290.t01 | Wine grape | cytosol | 21.52 | 8.46 |
| Os02t0684900-01 | Rice | cytosol | 0.76 | 0.7 |
| Os09t0560500-01 | Rice | mitochondrion, plastid | 0.0 | 0.0 |
Protein Annotations
| EntrezGene:100265192 | wikigene:100265192 | Gene3D:2.130.10.30 | MapMan:35.1 | ProteinID:CBI33673 | ProteinID:CBI33673.3 |
| UniProt:D7TT51 | EMBL:FN596245 | InterPro:IPR000408 | InterPro:IPR009091 | EntrezGene:LOC100265192 | wikigene:LOC100265192 |
| PFAM:PF00415 | PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF206 |
| InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | SUPFAM:SSF50985 | TIGR:TC51763 | UniParc:UPI00015C83D5 | ArrayExpress:VIT_14s0006g03240 |
| EnsemblPlantsGene:VIT_14s0006g03240 | EnsemblPlants:VIT_14s0006g03240.t01 | unigene:Vvi.2203 | RefSeq:XP_002283479 | RefSeq:XP_002283479.1 | : |
Description
No Description!
Coordinates
chr14:+:21825869..21835300
Molecular Weight (calculated)
42316.1 Da
IEP (calculated)
7.146
GRAVY (calculated)
-0.328
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKPKAIIS WGSGEDGQLG IGNNEEKEWV CAVKALAAQN VCSVVAGSRN SLAICEDGKL FTWGWNQRGT LGHPPETKTE NIPSQVKALA NAKIVQAAIG
101: GWHCLAVDDQ GRAYAWGGNE YGQCGEEPER KDDTGRPLRR DITIPQRCAS KLSVRQVAAG GTHSVVLTRE GHVWTWGQPW PPGDIKQIST PVRVQGLEKV
201: RLIAVGAFHN LALLEDGILW AWGNNEYGQL GTGDTQPRSQ PIAVQGLSDL TLVDIAAGGW HSTALTDDGG VYGWGRGEHG RLGFGDDKSS KMVPQKVQLL
301: VEENIVQISC GGTHSVALTR DGRMFSFGRG DHGRLGYGRK VTTGHPMEVP INLPPATNLS GSGAGGHWCS KLVACGGRHT LAIVEWLAHE PEQLI
101: GWHCLAVDDQ GRAYAWGGNE YGQCGEEPER KDDTGRPLRR DITIPQRCAS KLSVRQVAAG GTHSVVLTRE GHVWTWGQPW PPGDIKQIST PVRVQGLEKV
201: RLIAVGAFHN LALLEDGILW AWGNNEYGQL GTGDTQPRSQ PIAVQGLSDL TLVDIAAGGW HSTALTDDGG VYGWGRGEHG RLGFGDDKSS KMVPQKVQLL
301: VEENIVQISC GGTHSVALTR DGRMFSFGRG DHGRLGYGRK VTTGHPMEVP INLPPATNLS GSGAGGHWCS KLVACGGRHT LAIVEWLAHE PEQLI
001: MVTATSIIAW GSGEDGQLGI GTNEEKEWAC VVEALEPYSV RSVVSGSRNS LAICDDGTMF TWGWNQRGTL GHQPETKTEN IPSRVKALAN VKITQAAIGG
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPLKD EMGRPVRRDI VIPKRCAPKL TVRQVAAGGT HSVVLTREGH VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LEEDGRLLAW GNNEYGQLGT GDTQPTSHPV PVQGLDDLTL VDIAAGGWHS TALTDKGEVY GWGRGEHGRL GLGDNDKSSK MVPQKVNLLA
301: EEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI KIPPPEGSFN HTDEEEEGKW SAKSIACGGR HTLAIVEWKS DDI
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPLKD EMGRPVRRDI VIPKRCAPKL TVRQVAAGGT HSVVLTREGH VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LEEDGRLLAW GNNEYGQLGT GDTQPTSHPV PVQGLDDLTL VDIAAGGWHS TALTDKGEVY GWGRGEHGRL GLGDNDKSSK MVPQKVNLLA
301: EEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI KIPPPEGSFN HTDEEEEGKW SAKSIACGGR HTLAIVEWKS DDI
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q0WSJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.