Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008654.1-P | Field mustard | cytosol | 99.0 | 99.24 |
| CDX69479 | Canola | cytosol | 99.0 | 99.24 |
| AT5G16040.1 | Thale cress | cytosol | 92.96 | 93.43 |
| CDY34733 | Canola | cytosol | 74.87 | 88.96 |
| KRG93861 | Soybean | nucleus | 81.16 | 81.77 |
| PGSC0003DMT400032945 | Potato | extracellular | 78.64 | 80.05 |
| Solyc02g085780.2.1 | Tomato | cytosol | 78.39 | 80.0 |
| VIT_14s0006g03240.t01 | Wine grape | cytosol | 78.39 | 78.99 |
| GSMUA_Achr9P15560_001 | Banana | cytosol | 73.37 | 78.49 |
| Zm00001d050380_P004 | Maize | cytosol | 76.63 | 78.41 |
| KXG25196 | Sorghum | cytosol | 76.63 | 78.01 |
| TraesCS7D01G282600.1 | Wheat | cytosol | 72.36 | 76.39 |
| TraesCS7B01G200200.1 | Wheat | cytosol | 73.37 | 75.06 |
| TraesCS7A01G284800.1 | Wheat | cytosol | 73.62 | 73.43 |
| Zm00001d032229_P002 | Maize | mitochondrion | 76.13 | 72.31 |
| HORVU7Hr1G062090.6 | Barley | cytosol | 73.12 | 70.29 |
| CDY46423 | Canola | cytosol | 25.63 | 26.91 |
| CDY69131 | Canola | cytosol | 20.85 | 25.86 |
| CDY16215 | Canola | cytosol | 24.62 | 25.39 |
| CDY43762 | Canola | cytosol | 25.38 | 23.6 |
| CDY44785 | Canola | mitochondrion | 24.87 | 22.86 |
| CDX81201 | Canola | cytosol | 25.13 | 22.73 |
| CDY40735 | Canola | mitochondrion | 24.87 | 22.65 |
| CDX84451 | Canola | cytosol | 25.38 | 22.65 |
| CDY60046 | Canola | cytosol | 25.13 | 22.32 |
| CDY31347 | Canola | cytosol | 24.12 | 22.02 |
| CDY02190 | Canola | mitochondrion | 24.12 | 21.67 |
| CDY51633 | Canola | mitochondrion | 24.12 | 21.62 |
| CDY39843 | Canola | cytosol | 21.61 | 21.29 |
| CDY04192 | Canola | cytosol | 25.88 | 20.93 |
| CDY39172 | Canola | cytosol | 25.63 | 20.73 |
| CDY57523 | Canola | cytosol | 23.37 | 19.75 |
| CDY43240 | Canola | cytosol | 23.37 | 19.7 |
| CDY13609 | Canola | cytosol | 25.38 | 19.09 |
| CDX83586 | Canola | cytosol, plastid | 25.38 | 19.09 |
| CDY56827 | Canola | cytosol | 22.86 | 19.08 |
| CDX99731 | Canola | cytosol, plastid | 25.63 | 19.07 |
| CDX97668 | Canola | cytosol | 22.61 | 18.87 |
| CDY40988 | Canola | cytosol, plastid | 25.63 | 18.58 |
| CDY28863 | Canola | cytosol | 24.12 | 18.46 |
| CDY01845 | Canola | plastid | 23.87 | 18.38 |
| CDY56518 | Canola | cytosol, plastid | 23.87 | 18.27 |
| CDX96062 | Canola | plastid | 23.62 | 18.15 |
| CDY14709 | Canola | nucleus | 24.87 | 14.33 |
| CDX87986 | Canola | cytosol | 6.78 | 13.11 |
| CDY66504 | Canola | cytosol | 27.14 | 13.09 |
| CDY48550 | Canola | cytosol | 27.89 | 11.33 |
| CDY20113 | Canola | endoplasmic reticulum, extracellular | 22.36 | 10.79 |
| CDY21840 | Canola | endoplasmic reticulum, extracellular | 22.36 | 10.77 |
| CDX77871 | Canola | cytosol | 25.13 | 10.54 |
| CDX88324 | Canola | cytosol | 27.89 | 10.46 |
| CDY21795 | Canola | cytosol | 25.13 | 10.45 |
| CDX85076 | Canola | cytosol | 26.88 | 10.31 |
| CDX97187 | Canola | nucleus | 27.39 | 10.3 |
| CDX87557 | Canola | cytosol | 27.64 | 10.25 |
| CDY12764 | Canola | cytosol | 26.88 | 10.21 |
| CDX85690 | Canola | nucleus | 27.39 | 10.19 |
| CDY47138 | Canola | cytosol | 26.63 | 10.12 |
| CDY11586 | Canola | cytosol | 26.63 | 10.07 |
| CDX91165 | Canola | nucleus | 27.14 | 10.07 |
| CDX69686 | Canola | nucleus | 26.88 | 10.0 |
| CDY70949 | Canola | cytosol | 8.79 | 9.89 |
| CDY44086 | Canola | plasma membrane, vacuole | 26.13 | 9.89 |
| CDY28580 | Canola | plasma membrane | 25.88 | 9.87 |
| CDY13998 | Canola | nucleus | 27.64 | 9.86 |
| CDX92532 | Canola | nucleus | 27.39 | 9.78 |
| CDX88891 | Canola | cytosol, mitochondrion, nucleus | 27.39 | 9.6 |
| CDY49416 | Canola | cytosol | 26.88 | 9.56 |
| CDX77534 | Canola | cytosol | 26.63 | 9.54 |
| CDY31624 | Canola | cytosol | 23.12 | 9.36 |
| CDX70876 | Canola | cytosol | 25.38 | 9.06 |
| CDX87989 | Canola | cytosol | 22.61 | 8.98 |
| CDX68076 | Canola | cytosol | 12.06 | 5.78 |
| Os02t0684900-01 | Rice | cytosol | 0.5 | 0.46 |
| Os09t0560500-01 | Rice | mitochondrion, plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.130.10.30 | MapMan:35.1 | UniProt:A0A078GPA7 | EnsemblPlants:CDY26488 | ProteinID:CDY26488 | ProteinID:CDY26488.1 |
| EnsemblPlantsGene:GSBRNA2T00035301001 | InterPro:IPR000408 | InterPro:IPR009091 | PFAM:PF00415 | PRINTS:PR00633 | ScanProsite:PS00626 |
| PFscan:PS50012 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF206 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | SUPFAM:SSF50985 |
| UniParc:UPI0004EE0497 | SEG:seg | : | : | : | : |
Description
BnaC09g41800DBnaC09g41800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GPA7]
Coordinates
chrLK032190:-:417929..420510
Molecular Weight (calculated)
42948.4 Da
IEP (calculated)
5.180
GRAVY (calculated)
-0.418
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MASATSVIAW GSGEDGQLGL GTYEEKEWAC VVEALDPFAV RSVVGGSRNS LAICDGGKLF TWGWNQRGTL GHPPEKKTES VPSLVKSLAN VKITQAAIGG
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD ESGRPVRRDI VIPKRCAPKL TVRQVAAGGT HSVVLTREGS VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSHPI PVQGLDDLTL VDIAAGGWHS TALTEEGEVY AWGRGEHGRL GFGDNDKSSK MVAQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI DIPPPEGQFN HADEEEDGKW IAKFVACGGR HTLAIMEWKA DQEEEETE
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD ESGRPVRRDI VIPKRCAPKL TVRQVAAGGT HSVVLTREGS VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSHPI PVQGLDDLTL VDIAAGGWHS TALTEEGEVY AWGRGEHGRL GFGDNDKSSK MVAQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI DIPPPEGQFN HADEEEDGKW IAKFVACGGR HTLAIMEWKA DQEEEETE
001: MASATSVIAW GSGEDGQLGL GTDEEKELAS VVDALEPFNV RSVVGGSRNS LAICDDGKLF TWGWNQRGTL GHPPETKTES TPSLVKSLAN VKIVQAAIGG
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD ETGRPVRRDI VIPKRCAQQL TVRQVAAGGT HSVVLTREGY VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSYPI PVQGLDDLTL VDIAAGGWHS TALTNEGEVY GWGRGEHGRL GFGDNDKSSK MLPQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI HIPPPEGRFN HTDEEDDGKW IAKHVACGGR HTLAIVEWKY DQEETE
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD ETGRPVRRDI VIPKRCAQQL TVRQVAAGGT HSVVLTREGY VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSYPI PVQGLDDLTL VDIAAGGWHS TALTNEGEVY GWGRGEHGRL GFGDNDKSSK MLPQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI HIPPPEGRFN HTDEEDDGKW IAKHVACGGR HTLAIVEWKY DQEETE
Arabidopsis Description
At5g16040 [Source:UniProtKB/TrEMBL;Acc:Q9LFS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.