Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032945 | Potato | extracellular | 97.44 | 97.19 |
| VIT_14s0006g03240.t01 | Wine grape | cytosol | 86.41 | 85.32 |
| KRG93861 | Soybean | nucleus | 82.82 | 81.77 |
| CDY34733 | Canola | cytosol | 69.23 | 80.6 |
| GSMUA_Achr9P15560_001 | Banana | cytosol | 76.41 | 80.11 |
| Bra021435.1-P | Field mustard | cytosol | 80.0 | 79.59 |
| Bra008654.1-P | Field mustard | cytosol | 80.77 | 79.35 |
| AT5G16040.1 | Thale cress | cytosol | 80.51 | 79.29 |
| AT3G02510.1 | Thale cress | cytosol | 79.49 | 78.88 |
| CDX69479 | Canola | cytosol | 80.26 | 78.84 |
| Zm00001d050380_P004 | Maize | cytosol | 78.46 | 78.66 |
| CDY26488 | Canola | cytosol | 80.0 | 78.39 |
| TraesCS7D01G282600.1 | Wheat | cytosol | 74.87 | 77.45 |
| TraesCS7B01G200200.1 | Wheat | cytosol | 77.18 | 77.38 |
| KXG25196 | Sorghum | cytosol | 77.44 | 77.24 |
| TraesCS7A01G284800.1 | Wheat | cytosol | 76.67 | 74.94 |
| Zm00001d032229_P002 | Maize | mitochondrion | 77.18 | 71.84 |
| HORVU7Hr1G062090.6 | Barley | cytosol | 76.15 | 71.74 |
| Solyc05g006940.2.1 | Tomato | cytosol | 24.87 | 24.62 |
| Solyc05g056590.2.1 | Tomato | cytosol | 16.67 | 23.64 |
| Solyc05g018620.2.1 | Tomato | cytosol | 18.46 | 23.45 |
| Solyc07g042980.2.1 | Tomato | cytosol | 12.56 | 20.16 |
| Solyc07g042970.2.1 | Tomato | mitochondrion | 11.79 | 19.09 |
| Solyc07g063300.2.1 | Tomato | plasma membrane | 23.59 | 18.93 |
| Solyc02g089220.2.1 | Tomato | mitochondrion | 15.38 | 18.18 |
| Solyc05g014030.2.1 | Tomato | cytosol | 23.08 | 16.89 |
| Solyc03g116360.1.1 | Tomato | cytosol | 29.74 | 12.26 |
| Solyc02g036390.1.1 | Tomato | cytosol | 24.62 | 12.23 |
| Solyc12g099740.1.1 | Tomato | nucleus | 27.95 | 10.63 |
| Solyc05g007290.1.1 | Tomato | endoplasmic reticulum | 26.67 | 10.31 |
| Solyc11g065120.1.1 | Tomato | cytosol | 29.23 | 10.1 |
| Solyc03g005590.1.1 | Tomato | cytosol, plastid | 27.69 | 10.08 |
| Solyc04g071040.2.1 | Tomato | cytosol | 28.46 | 9.86 |
| Solyc02g081250.1.1 | Tomato | cytosol | 25.13 | 4.7 |
| Os02t0684900-01 | Rice | cytosol | 0.51 | 0.46 |
| Solyc05g007280.2.1 | Tomato | cytosol | 0.0 | 0.0 |
| Os09t0560500-01 | Rice | mitochondrion, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc02g085780.2.1 | EnsemblPlantsGene:Solyc02g085780.2 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF206 | PFAM:PF00415 | PFscan:PS50012 | PRINTS:PR00633 |
| ScanProsite:PS00626 | SUPFAM:SSF50985 | UniParc:UPI00027675D2 | UniProt:K4BB89 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr2:-:48556752..48562074
Molecular Weight (calculated)
41586.0 Da
IEP (calculated)
6.894
GRAVY (calculated)
-0.355
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRNAVIAW GSGEDGQLGI GNNEEKEWVC SIKALESEKV SSVVAGSRNS LAICEDGRLF TWGWNQRGTL GHPPETKTEN IPSQVKALAN VKIVQAAIGG
101: WHCLAVDDQG KAYAWGGNEY GQCGEEPERK DDTGRPVKRD IVIPKRCASK LSVRQVAAGG THSVVLTREG QVWTWGQPWP PGDIKQISTP VRVQGLASVR
201: LIAVGAFHNL ALLDDGVLMA WGNNEYGQLG TGDTQPRSQP IAIQGLSGLT LVDIAAGGWH SAALTNEGEV YGWGRGEHGR LGFGDDKSSK MVPQKVQLLA
301: GENIVQVSCG GTHSVALAHD GRMFSFGRGD HGRLGYGRKS TTGHPSEVPI NIPPPSDVSS AEGGRWCAKL VACGGRHTLA SIEWQTFESE
101: WHCLAVDDQG KAYAWGGNEY GQCGEEPERK DDTGRPVKRD IVIPKRCASK LSVRQVAAGG THSVVLTREG QVWTWGQPWP PGDIKQISTP VRVQGLASVR
201: LIAVGAFHNL ALLDDGVLMA WGNNEYGQLG TGDTQPRSQP IAIQGLSGLT LVDIAAGGWH SAALTNEGEV YGWGRGEHGR LGFGDDKSSK MVPQKVQLLA
301: GENIVQVSCG GTHSVALAHD GRMFSFGRGD HGRLGYGRKS TTGHPSEVPI NIPPPSDVSS AEGGRWCAKL VACGGRHTLA SIEWQTFESE
001: MASATSVIAW GSGEDGQLGL GTDEEKELAS VVDALEPFNV RSVVGGSRNS LAICDDGKLF TWGWNQRGTL GHPPETKTES TPSLVKSLAN VKIVQAAIGG
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD ETGRPVRRDI VIPKRCAQQL TVRQVAAGGT HSVVLTREGY VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSYPI PVQGLDDLTL VDIAAGGWHS TALTNEGEVY GWGRGEHGRL GFGDNDKSSK MLPQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI HIPPPEGRFN HTDEEDDGKW IAKHVACGGR HTLAIVEWKY DQEETE
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD ETGRPVRRDI VIPKRCAQQL TVRQVAAGGT HSVVLTREGY VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSYPI PVQGLDDLTL VDIAAGGWHS TALTNEGEVY GWGRGEHGRL GFGDNDKSSK MLPQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI HIPPPEGRFN HTDEEDDGKW IAKHVACGGR HTLAIVEWKY DQEETE
Arabidopsis Description
At5g16040 [Source:UniProtKB/TrEMBL;Acc:Q9LFS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.