Factsheet for Solyc05g018620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g005950.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63860.1	Solyc12g005950.1.1	AT2G32950.1	19165148

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0031g02560.t01	Wine grape	cytosol	80.46	55.51
AT5G63860.1	Thale cress	cytosol	77.2	53.86
CDY31347	Canola	cytosol	75.57	53.21
CDX81201	Canola	cytosol	76.22	53.18
CDY43762	Canola	cytosol	73.62	52.8
CDY60046	Canola	cytosol	76.87	52.68
Bra029198.1-P	Field mustard	cytosol	70.68	52.67
GSMUA_Achr6P17690_001	Banana	cytosol	74.59	52.16
Bra037755.1-P	Field mustard	cytosol	70.68	52.16
GSMUA_Achr3P19000_001	Banana	nucleus	76.22	52.12
TraesCS2A01G306400.3	Wheat	cytosol	74.92	51.92
Bra024242.1-P	Field mustard	cytosol	69.38	51.82
KRH40960	Soybean	cytosol	57.0	51.78
EES10837	Sorghum	cytosol	74.59	51.69
TraesCS2B01G323100.1	Wheat	unclear	74.27	51.58
CDY39843	Canola	cytosol	67.75	51.49
HORVU2Hr1G076180.1	Barley	cytosol, endoplasmic reticulum	73.94	51.47
TraesCS2D01G304900.2	Wheat	cytosol	74.27	51.47
Zm00001d003632_P003	Maize	extracellular	73.94	51.24
Os04t0435700-01	Rice	plasma membrane	75.24	50.99
CDX84451	Canola	cytosol	73.94	50.9
TraesCS6B01G180900.1	Wheat	cytosol	65.47	49.63
KRH59606	Soybean	cytosol	68.73	48.28
Os02t0554100-01	Rice	cytosol, plasma membrane	70.68	47.9
KRH53944	Soybean	plastid	72.64	47.05
HORVU6Hr1G030600.2	Barley	plasma membrane	66.12	45.93
TraesCS6D01G142500.1	Wheat	golgi	65.47	45.68
KRH63996	Soybean	nucleus	71.66	45.64
TraesCS6A01G153100.1	Wheat	golgi	65.47	42.77
Solyc05g056590.2.1	Tomato	cytosol	22.15	24.73
Solyc02g089220.2.1	Tomato	mitochondrion	24.1	22.42
Solyc07g042980.2.1	Tomato	cytosol	17.59	22.22
Solyc02g085780.2.1	Tomato	cytosol	23.45	18.46
Solyc05g006940.2.1	Tomato	cytosol	21.5	16.75
Solyc07g063300.2.1	Tomato	plasma membrane	26.06	16.46
Solyc05g014030.2.1	Tomato	cytosol	24.76	14.26
Solyc12g099740.1.1	Tomato	nucleus	35.5	10.63
Solyc02g036390.1.1	Tomato	cytosol	26.38	10.32
Solyc03g116360.1.1	Tomato	cytosol	31.27	10.15
Solyc11g065120.1.1	Tomato	cytosol	36.81	10.01
Solyc05g007290.1.1	Tomato	endoplasmic reticulum	32.57	9.91
Solyc04g071040.2.1	Tomato	cytosol	34.85	9.5
Solyc03g005590.1.1	Tomato	cytosol, plastid	32.9	9.43
Solyc07g042970.2.1	Tomato	mitochondrion	7.17	9.13
Solyc02g081250.1.1	Tomato	cytosol	30.29	4.46
Solyc05g007280.2.1	Tomato	cytosol	0.65	3.39

Protein Annotations

Gene3D:2.130.10.30	MapMan:35.1	GO:GO:0000785	GO:GO:0003674	GO:GO:0003682	GO:GO:0004871
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009411
GO:GO:0009605	GO:GO:0009628	GO:GO:0009649	GO:GO:0009881	GO:GO:0009987	GO:GO:0010224
GO:GO:0038023	GO:GO:0042802	GO:GO:0042803	InterPro:IPR000408	InterPro:IPR009091	UniProt:K4BZB6
PFAM:PF00415	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF317
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SUPFAM:SSF50985	EnsemblPlantsGene:Solyc05g018620.2	EnsemblPlants:Solyc05g018620.2.1	UniParc:UPI00027673FC
InterPro:UVR8	:	:	:	:	:

Description

Ultraviolet-B receptor UVR8 [Source:Projected from Arabidopsis thaliana (AT5G63860) UniProtKB/Swiss-Prot;Acc:Q9FN03]

Coordinates

chr5:-:22619375..22635138

Molecular Weight (calculated)

33542.2 Da

IEP (calculated)

6.737

GRAVY (calculated)

-0.492

Length

307 amino acids

Sequence
(BLAST)

001: MGGEVQSWGR NQNGQLGLGT TEDSLVPRKI EAFKGIPVKM VAAGAEHTAA VTEDGELYGW GWGRYGNLGL GDRNDRLVPE KVSADVGEKM FIVACGWRHT
101: ICVSSSGALY TYGWSKYGQL GHGDFEDHLS PHKVQALHGS FTSQISGGWR HTMALTSDGK LYGWGWNKFG QVGVDDNCDH CSPVQVKFPH DQKVILISCG
201: WRHTLAATER QNVFSWGRGT NGQLGHGESV DRSVPRIIEV LSVDGSSGQQ IRSSTVDPSA AEKSWVSPTE RYAVVPDENL PRQSVIPERG TGNDVNVPEN
301: DVKRIRL

Best Arabidopsis Sequence Match ( AT5G63860.1 )
(BLAST)

001: MAEDMAADEV TAPPRKVLII SAGASHSVAL LSGDIVCSWG RGEDGQLGHG DAEDRPSPTQ LSALDGHQIV SVTCGADHTV AYSQSGMEVY SWGWGDFGRL
101: GHGNSSDLFT PLPIKALHGI RIKQIACGDS HCLAVTMEGE VQSWGRNQNG QLGLGDTEDS LVPQKIQAFE GIRIKMVAAG AEHTAAVTED GDLYGWGWGR
201: YGNLGLGDRT DRLVPERVTS TGGEKMSMVA CGWRHTISVS YSGALYTYGW SKYGQLGHGD LEDHLIPHKL EALSNSFISQ ISGGWRHTMA LTSDGKLYGW
301: GWNKFGQVGV GNNLDQCSPV QVRFPDDQKV VQVSCGWRHT LAVTERNNVF AWGRGTNGQL GIGESVDRNF PKIIEALSVD GASGQHIESS NIDPSSGKSW
401: VSPAERYAVV PDETGLTDGS SKGNGGDISV PQTDVKRVRI

Arabidopsis Description

UVR8Ultraviolet-B receptor UVR8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.