Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400034994 | Potato | cytosol | 94.12 | 97.39 |
| CDY66504 | Canola | cytosol | 52.57 | 68.24 |
| VIT_05s0049g01140.t01 | Wine grape | cytosol | 67.6 | 68.24 |
| AT3G23270.2 | Thale cress | cytosol | 61.25 | 62.24 |
| CDX85076 | Canola | cytosol | 60.13 | 62.04 |
| Bra023740.1-P | Field mustard | cytosol | 60.6 | 60.88 |
| CDY12764 | Canola | cytosol | 58.54 | 59.83 |
| KRH00393 | Soybean | cytosol | 58.45 | 58.56 |
| CDX77534 | Canola | cytosol | 60.41 | 58.24 |
| KRH69117 | Soybean | cytosol | 58.17 | 57.79 |
| KRH40796 | Soybean | cytosol | 40.24 | 57.47 |
| KRH31700 | Soybean | cytosol | 57.61 | 57.24 |
| AT4G14368.1 | Thale cress | cytosol | 59.01 | 57.14 |
| CDY49416 | Canola | cytosol | 57.98 | 55.5 |
| EES19890 | Sorghum | cytosol | 52.01 | 54.61 |
| TraesCS1B01G384600.1 | Wheat | cytosol | 52.94 | 54.05 |
| TraesCS1A01G366800.1 | Wheat | cytosol | 52.66 | 54.02 |
| Os01t0700200-01 | Rice | cytosol | 52.57 | 53.93 |
| HORVU1Hr1G078890.1 | Barley | cytosol | 52.85 | 53.85 |
| Os05t0545200-00 | Rice | cytosol | 50.98 | 53.85 |
| TraesCS1D01G372300.1 | Wheat | cytosol | 52.75 | 53.66 |
| EES01332 | Sorghum | cytosol | 52.75 | 53.5 |
| Zm00001d011660_P003 | Maize | cytosol | 52.57 | 53.26 |
| Zm00001d038882_P002 | Maize | cytosol | 52.1 | 52.89 |
| Solyc04g071040.2.1 | Tomato | cytosol | 52.57 | 50.0 |
| Bra014931.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 58.64 | 49.45 |
| KRH65503 | Soybean | cytosol, mitochondrion, nucleus | 44.72 | 45.79 |
| Solyc12g099740.1.1 | Tomato | nucleus | 42.86 | 44.78 |
| Solyc11g065120.1.1 | Tomato | cytosol | 46.97 | 44.55 |
| Solyc05g007280.2.1 | Tomato | cytosol | 2.33 | 42.37 |
| Solyc03g116360.1.1 | Tomato | cytosol | 36.13 | 40.91 |
| Solyc05g007290.1.1 | Tomato | endoplasmic reticulum | 37.44 | 39.74 |
| Solyc02g036390.1.1 | Tomato | cytosol | 28.85 | 39.36 |
| Solyc05g018620.2.1 | Tomato | cytosol | 9.43 | 32.9 |
| Solyc05g006940.2.1 | Tomato | cytosol | 11.2 | 30.46 |
| Solyc07g042980.2.1 | Tomato | cytosol | 6.72 | 29.63 |
| Solyc02g085780.2.1 | Tomato | cytosol | 10.08 | 27.69 |
| Solyc05g056590.2.1 | Tomato | cytosol | 7.1 | 27.64 |
| Solyc07g042970.2.1 | Tomato | mitochondrion | 5.88 | 26.14 |
| Solyc07g063300.2.1 | Tomato | plasma membrane | 11.48 | 25.31 |
| Solyc05g014030.2.1 | Tomato | cytosol | 11.48 | 23.08 |
| Solyc02g089220.2.1 | Tomato | mitochondrion | 7.1 | 23.03 |
| Solyc02g081250.1.1 | Tomato | cytosol | 35.57 | 18.26 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:BRX_N | InterPro:Brevis_radix_dom |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000408 | InterPro:IPR009091 |
| InterPro:IPR011993 | InterPro:IPR013083 | InterPro:IPR013591 | InterPro:IPR017455 | UniProt:K4BDY3 | PFAM:PF00415 |
| PFAM:PF01363 | PFAM:PF08381 | PFAM:PF13713 | InterPro:PH-like_dom_sf | PRINTS:PR00633 | ScanProsite:PS00626 |
| PFscan:PS50012 | PFscan:PS50178 | PFscan:PS51514 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF87 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | SMART:SM00064 | SUPFAM:SSF50729 | SUPFAM:SSF50985 | SUPFAM:SSF57903 | EnsemblPlantsGene:Solyc03g005590.1 |
| EnsemblPlants:Solyc03g005590.1.1 | UniParc:UPI000276925C | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:425861..433082
Molecular Weight (calculated)
117081.0 Da
IEP (calculated)
9.042
GRAVY (calculated)
-0.473
Length
1071 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSFQCNASGT TVKGLITLKK GTQLIKYSRK GKPKFCPFRV SPDETTLIWY SRGSERNLKL SAVSKIIPGQ RTPVFKRFLR PEKEYLSFSL IYNNGERSLD
0101: LICKDKIEAE IWIAGLKNII SAGQARSRRT RSDITDLQNS TPCGASLDFS QTVSRDWTSA DPYGYETSSN ARSSDVGSER GNMQVRTSSD GFRISVSSTP
0201: SCSSGGSGPD DIESLGDVYV WGEIWCDGVL KDGAGNPIPV KHDVLTPKPL ESNVVLDVHQ IACGVRHVAL VTRQGEVFTW GEESGGRLGH GVEKDFSRPK
0301: LVEFLAVTNV DFVSCGEFHT CAVSTMGDLY TWGDGTHNAG LLGHGNDVSH WIPKRVSGPL EGLQVLSVAC GTWHSALATA NGKLFTFGDG TYGALGHGDR
0401: VTVPYPKEVQ SLYGLKTIKV ACGVWHTAAI VEVTNHNCGN LPTRKLFTWG DGDKYRLGHG NKEAYMLPTC VSALIDYNFH QLACGHNITV GLTTSGHVFI
0501: MGSNAYGQLG NPQADGKAPS LVQDRLVGEF VEEITCGSFH VAVLTSRSEV FTWGKGANGR LGHGDTEDRN SPTLIEALKD RHVKNIVCGS NYTASICIHK
0601: WVSGADQSVC SGCRQAFGFT RKRHNCYNCG LVHCHACSSK KALKAALAPT PGKPHRVCDS CYMKLKKASE GNSSLFVKKF NSSHRPIENS KLGRGEAKIS
0701: RVLLSPTIEP IKYLEVKSMR SGLKSDNFSI VRASQVPSLL QLKDIAFPSS LSALQYALKP VVTAPPQLQL QPPPPPPSSN SRPASPYSRR PSPPRSPAPV
0801: FSRGVIDSLR KTNDVLHQEV AKLQNQIKSL KQKSDGQDAE LRKLKESSQE SSRLVAERAS KCNVAVETMK SITIQLKEMT QELPPDISES PAIKSIHAQV
0901: ESFLNTFGNQ ASEDNSSLQP DTSYSHQKPT HRNNISESVI RNDHWDAAGI PETSHSVDGT VRENHGQSTP RSFSGSPRAP REGQKEVIEQ FEPGVYVTLL
1001: QLTNGTKIFK RVRFSKRRFA EQQAEEWWKE NKDRLLKKYS PPKTNVASTT TDSSPASPAP APPPQENSEA S
0101: LICKDKIEAE IWIAGLKNII SAGQARSRRT RSDITDLQNS TPCGASLDFS QTVSRDWTSA DPYGYETSSN ARSSDVGSER GNMQVRTSSD GFRISVSSTP
0201: SCSSGGSGPD DIESLGDVYV WGEIWCDGVL KDGAGNPIPV KHDVLTPKPL ESNVVLDVHQ IACGVRHVAL VTRQGEVFTW GEESGGRLGH GVEKDFSRPK
0301: LVEFLAVTNV DFVSCGEFHT CAVSTMGDLY TWGDGTHNAG LLGHGNDVSH WIPKRVSGPL EGLQVLSVAC GTWHSALATA NGKLFTFGDG TYGALGHGDR
0401: VTVPYPKEVQ SLYGLKTIKV ACGVWHTAAI VEVTNHNCGN LPTRKLFTWG DGDKYRLGHG NKEAYMLPTC VSALIDYNFH QLACGHNITV GLTTSGHVFI
0501: MGSNAYGQLG NPQADGKAPS LVQDRLVGEF VEEITCGSFH VAVLTSRSEV FTWGKGANGR LGHGDTEDRN SPTLIEALKD RHVKNIVCGS NYTASICIHK
0601: WVSGADQSVC SGCRQAFGFT RKRHNCYNCG LVHCHACSSK KALKAALAPT PGKPHRVCDS CYMKLKKASE GNSSLFVKKF NSSHRPIENS KLGRGEAKIS
0701: RVLLSPTIEP IKYLEVKSMR SGLKSDNFSI VRASQVPSLL QLKDIAFPSS LSALQYALKP VVTAPPQLQL QPPPPPPSSN SRPASPYSRR PSPPRSPAPV
0801: FSRGVIDSLR KTNDVLHQEV AKLQNQIKSL KQKSDGQDAE LRKLKESSQE SSRLVAERAS KCNVAVETMK SITIQLKEMT QELPPDISES PAIKSIHAQV
0901: ESFLNTFGNQ ASEDNSSLQP DTSYSHQKPT HRNNISESVI RNDHWDAAGI PETSHSVDGT VRENHGQSTP RSFSGSPRAP REGQKEVIEQ FEPGVYVTLL
1001: QLTNGTKIFK RVRFSKRRFA EQQAEEWWKE NKDRLLKKYS PPKTNVASTT TDSSPASPAP APPPQENSEA S
0001: MKTDGMADPS SYVNHDRDID QALVSLKKGT QLLKYSRKGR PKFRSFRLSP DETTLFWLSH GEEKGLKLAT VSRILPGQRT AVFRRYLRPE KDYLSFSLIY
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEIHDSDCFS TGRPSTASID FAPNNTRRGR TSIDLGIQNS PTKFGSSDVG YERGNMLRPS
0201: TDGFRISVSS TPSCSTGTSG PDDIESLGDV YVWGEVWSDG ISPDGVVNST TVKIDVLIPK PLESNVVLDV HQIACGVRHI ALVTRQGEVF TWEEEAGGRL
0301: GHGIQVDVCR PKLVEFLALT NIDFVACGEY HTCAVSTSGD LFTWGDGIHN VGLLGHGSDL SHWIPKRVSG PVEGLQVLSV ACGTWHSALA TANGKLFTFG
0401: DGAFGVLGHG DRESVSYPKE VKMLSGLKTL KVACGVWHTV AIVEVMNQTG TSTSSRKLFT WGDGDKNRLG HGNKETYLLP TCVSSLIDYN FNQIACGHTF
0501: TVALTTSGHV FTMGGTSHGQ LGSSNSDGKL PCLVQDRLVG EFVEEISCGD HHVAVLTSRS EVFTWGKGSN GRLGHGDKDD RKTPTLVEAL RERHVKSISC
0601: GSNFTSSICI HKWVSGADQS VCSGCRQAFG FTRKRHNCYN CGLVHCHACS SKKALKAALA PTPGKPHRVC DACYTKLKAG ESGYNSNVAN RNSTTPTRSL
0701: DGTGRPDRDI RSSRILLSPK TEPVKYSEVR SSRSESSIVR ASQVPALQQL RDVAFPSSLS AIQNAFKPVA SSSTSTLPSG TRSSRISSPP RSSGFSRGMI
0801: DTLKKSNGVI NKEMTKLQSQ IKNLKEKCDN QGTEIQRLKK TAREASDLAV KHSSKHKAAT EVMKSVAEHL RELKEKLPPE VSRCEAFESM NSQAEAYLNA
0901: SEASESCLPT TSLGMGQRDP TPSTNTQDQN IEEKQSSNGG NMRSQEPSGT TEASSSSKGG GKELIEQFEP GVYVTYVLHK NGGKIFRRVR FSKRRFDEHQ
1001: AEEWWNSKKD RLLKRYSHHA SSSSPTASDS VPTPTQPQPP ASDSVPTPTQ PQPPASDSVP TPTQPQPPAS PTQPNSDQAE DSKEVLDES
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEIHDSDCFS TGRPSTASID FAPNNTRRGR TSIDLGIQNS PTKFGSSDVG YERGNMLRPS
0201: TDGFRISVSS TPSCSTGTSG PDDIESLGDV YVWGEVWSDG ISPDGVVNST TVKIDVLIPK PLESNVVLDV HQIACGVRHI ALVTRQGEVF TWEEEAGGRL
0301: GHGIQVDVCR PKLVEFLALT NIDFVACGEY HTCAVSTSGD LFTWGDGIHN VGLLGHGSDL SHWIPKRVSG PVEGLQVLSV ACGTWHSALA TANGKLFTFG
0401: DGAFGVLGHG DRESVSYPKE VKMLSGLKTL KVACGVWHTV AIVEVMNQTG TSTSSRKLFT WGDGDKNRLG HGNKETYLLP TCVSSLIDYN FNQIACGHTF
0501: TVALTTSGHV FTMGGTSHGQ LGSSNSDGKL PCLVQDRLVG EFVEEISCGD HHVAVLTSRS EVFTWGKGSN GRLGHGDKDD RKTPTLVEAL RERHVKSISC
0601: GSNFTSSICI HKWVSGADQS VCSGCRQAFG FTRKRHNCYN CGLVHCHACS SKKALKAALA PTPGKPHRVC DACYTKLKAG ESGYNSNVAN RNSTTPTRSL
0701: DGTGRPDRDI RSSRILLSPK TEPVKYSEVR SSRSESSIVR ASQVPALQQL RDVAFPSSLS AIQNAFKPVA SSSTSTLPSG TRSSRISSPP RSSGFSRGMI
0801: DTLKKSNGVI NKEMTKLQSQ IKNLKEKCDN QGTEIQRLKK TAREASDLAV KHSSKHKAAT EVMKSVAEHL RELKEKLPPE VSRCEAFESM NSQAEAYLNA
0901: SEASESCLPT TSLGMGQRDP TPSTNTQDQN IEEKQSSNGG NMRSQEPSGT TEASSSSKGG GKELIEQFEP GVYVTYVLHK NGGKIFRRVR FSKRRFDEHQ
1001: AEEWWNSKKD RLLKRYSHHA SSSSPTASDS VPTPTQPQPP ASDSVPTPTQ PQPPASDSVP TPTQPQPPAS PTQPNSDQAE DSKEVLDES
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:F4JVE8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.