CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85076	Canola	cytosol	90.19	96.53
CDY66504	Canola	cytosol	67.24	90.55
AT3G23270.2	Thale cress	cytosol	81.1	85.48
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	91.0	79.61
CDY12764	Canola	cytosol	67.51	71.56
CDY49416	Canola	cytosol	67.06	66.58
VIT_05s0049g01140.t01	Wine grape	cytosol	60.94	63.81
PGSC0003DMT400034994	Potato	cytosol	56.8	60.97
Solyc03g005590.1.1	Tomato	cytosol, plastid	58.24	60.41
KRH00393	Soybean	cytosol	54.73	56.88
KRH40796	Soybean	cytosol	37.17	55.07
KRH69117	Soybean	cytosol	53.29	54.92
KRH31700	Soybean	cytosol	52.57	54.17
CDY70949	Canola	cytosol	16.92	53.11
Os01t0700200-01	Rice	cytosol	49.32	52.49
TraesCS1A01G366800.1	Wheat	cytosol	49.23	52.39
TraesCS1B01G384600.1	Wheat	cytosol	49.41	52.34
TraesCS1D01G372300.1	Wheat	cytosol	49.41	52.14
HORVU1Hr1G078890.1	Barley	cytosol	49.23	52.05
EES19890	Sorghum	cytosol	47.34	51.57
Os05t0545200-00	Rice	cytosol	46.35	50.79
Zm00001d011660_P003	Maize	cytosol	48.24	50.71
EES01332	Sorghum	cytosol	47.97	50.47
Zm00001d038882_P002	Maize	cytosol	47.79	50.33
CDY11586	Canola	cytosol	46.62	49.19
CDY47138	Canola	cytosol	46.35	49.19
CDX88324	Canola	cytosol	46.53	48.73
CDX87557	Canola	cytosol	46.98	48.65
CDX87986	Canola	cytosol	8.91	48.06
CDY48550	Canola	cytosol	41.49	47.04
CDX68076	Canola	cytosol	33.48	44.82
KRH65503	Soybean	cytosol, mitochondrion, nucleus	41.22	43.79
CDX69686	Canola	nucleus	41.76	43.36
CDX97187	Canola	nucleus	40.86	42.91
CDX91165	Canola	nucleus	41.31	42.78
CDX85690	Canola	nucleus	41.13	42.71
CDX92532	Canola	nucleus	40.86	40.75
CDY13998	Canola	nucleus	40.68	40.5
CDX88891	Canola	cytosol, mitochondrion, nucleus	41.22	40.35
CDX70876	Canola	cytosol	40.05	39.91
CDY28580	Canola	plasma membrane	35.28	37.55
CDY44086	Canola	plasma membrane, vacuole	35.46	37.45
CDY21795	Canola	cytosol	30.6	35.53
CDX77871	Canola	cytosol	30.33	35.51
CDY31624	Canola	cytosol	31.05	35.1
CDX87989	Canola	cytosol	31.23	34.63
CDY69131	Canola	cytosol	9.63	33.33
CDY46423	Canola	cytosol	11.25	32.98
CDY16215	Canola	cytosol	11.25	32.38
CDY43762	Canola	cytosol	12.33	32.01
CDY31347	Canola	cytosol	12.42	31.65
CDY39843	Canola	cytosol	11.43	31.44
CDX84451	Canola	cytosol	12.6	31.39
CDX81201	Canola	cytosol	12.33	31.14
CDY60046	Canola	cytosol	12.51	31.03
CDY44785	Canola	mitochondrion	10.71	27.48
CDY34733	Canola	cytosol	8.28	27.46
CDX69479	Canola	cytosol	9.63	26.95
CDY40735	Canola	mitochondrion	10.53	26.77
CDY26488	Canola	cytosol	9.54	26.63
CDY56827	Canola	cytosol	11.34	26.42
CDX97668	Canola	cytosol	11.34	26.42
CDY43240	Canola	cytosol	10.71	25.21
CDY02190	Canola	mitochondrion	9.99	25.06
CDY57523	Canola	cytosol	10.62	25.05
CDY51633	Canola	mitochondrion	9.99	25.0
CDY39172	Canola	cytosol	10.71	24.19
CDY04192	Canola	cytosol	10.62	23.98
CDX96062	Canola	plastid	11.16	23.94
CDY01845	Canola	plastid	10.98	23.6
CDX99731	Canola	cytosol, plastid	11.16	23.18
CDY13609	Canola	cytosol	10.89	22.87
CDY56518	Canola	cytosol, plastid	10.62	22.69
CDY28863	Canola	cytosol	10.62	22.69
CDX83586	Canola	cytosol, plastid	10.8	22.68
CDY40988	Canola	cytosol, plastid	10.62	21.49
CDY14709	Canola	nucleus	11.43	18.38
CDY20113	Canola	endoplasmic reticulum, extracellular	12.06	16.24
CDY21840	Canola	endoplasmic reticulum, extracellular	12.06	16.22

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078CNG1	InterPro:BRX_N
InterPro:Brevis_radix_dom	EnsemblPlants:CDX77534	ProteinID:CDX77534	ProteinID:CDX77534.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00128426001	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091
InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	PFAM:PF00415	PFAM:PF01363
PFAM:PF08381	PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633
PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF87	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0004EDBC5D
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

BnaA07g06720D

Coordinates

chrLK031811:-:1550006..1554495

Molecular Weight (calculated)

121338.0 Da

IEP (calculated)

8.617

GRAVY (calculated)

-0.378

Length

1111 amino acids

Sequence
(BLAST)

0001: MFRVLSDIHL DSGSVRIIPI TRNTTKQDPF GIYIGFGSVR IHFYRIGFGS GFRVRFICPA LADPASYVYH ERDIDQALIV LKKGTQLVKY SRKGKPKFRA
0101: FRLSPDEKTL IWFSHGEEKG LKLSEVSRVV PGQRTPVFKR FLRPEKDHLS FSLLFNNRER SLDLICKDKA ETEIWFAGLK YLIERSQVRY LRFAGFNFYT
0201: FLILSNVSRY PGLSVNINDS DYFSTGRQSI DVFPNNIPRG RTSIDLGSDV GYERGNMLRP STDGFRISVS STPSCSSGGS GPDDIESLGD VYVWGEVWSD
0301: GILPDGTVTK ETVKTDVLTP RPLESNVVLD VHQIVCGVRH VALVTRQGEV FTWGEEAGGR LGHGIQVDIS RPKLVEFLAL TNIDFVACGE YHTCVVSTSG
0401: DLFSWGDGIH NVGLLGHGSD ISHWIPKRVS GPLEGLQVLS VACGTWHSAL ATANGKLFTF GDGAFGVLGH GNRESVSCPK EVQSLNGLKT VKVACNIWHT
0501: VAIVEVMGQT GTSMSSRKLF TWGDGDKNRL GHGNKETYLL PTCVSSLIDY NFHQIACGHT FTVALTTSGH VFTMGGTSHG QLGNSISDGK LPCLVQDRLV
0601: GEFVEEIACG DHHVAVLTSR SEVFTWGKGA NGRLGHGDTD DRRTPTLVEA LRDRHVKSLS CGSNFTSSIC IHKWVSGADQ SICSGCRQAF GFTRKRHNCY
0701: NCGLVHCHAC SSKKALKAAL APTPGKPHRV CDACYSKLKA AESGYISNGN RTNVATPGRS MDGSVRIDKG TTRSSKVLLT GNNTESGKTS RLGVRPDASS
0801: VRASQVPSLQ QLKDIAFPTS LTAIQNALKP VAPAAVPARL LAGPMASPPP ASPPRTSGFS RSVIDSLKKT NEVMNQEMTK LQSQVKNLKQ KCNNQGTEIQ
0901: RFQKAAKEAF ELAAKQSSKH KSATEALKSV AEQLKGLKEK LPPEVSESEA FDSINSQAEA YLNANEVTET SLLTTSILDQ QETSPTGNTQ DQKIDEQVSS
1001: NSIPTESSSS SSSKTGGKES KEQFEPGVYV TFAVDVNGNK IFRRVRFSKK RFDEHQAEDW WTKNKDRLLK WYSPNSSSSP VASDSSIAPP PPSEPPSDPS
1101: VSEKDNEAEA D

Best Arabidopsis Sequence Match ( AT3G23270.2 )
(BLAST)

0001: MADPASCYIY HERDVDQALV VLKKGTQLLK YSRKGKPKFR AFRLSPDEKT LIWFSRGEEK GLKLFEVSRI VPGQRTAVFK RFLRPEKDHL SFSLLYNNRE
0101: RSLDLICKDK AETEVWFAAL KFLIEKSRNR RARSEIPEIH DSDTFSVGRQ SIDFVPSNIP RGRTSIDLGY QNNSDVGYER GNMLRPSTDG FRISVSSTPS
0201: CSSGGSGPDD IESLGDVYVW GEVWTEGILP DGTASNETVK TDVLTPRPLE SNVVLDVHQI VCGVRHVALV TRQGEVFTWG EEVGGRLGHG IQVDISRPKL
0301: VEFLALTNID FVACGEYHTC VVSTSGDLFS WGDGIHNVGL LGHGSDISHW IPKRVSGPLE GLQVLSVACG TWHSALATAN GKLFTFGDGA FGVLGHGNRE
0401: SVSYPKEVQS LNGLKTVKVA CSIWHTAAIV EVMGQTATSM SSRKLFTWGD GDKNRLGHGN KETYLLPTCV SSLIDYNFHK IACGHTFTVA LTTSGHVFTM
0501: GGTAHGQLGN SISDGKLPCL VQDRLVGEFV EEIACGAHHV AVLTSRSEVF TWGKGANGRL GHGDTEDKRT PTLVEALRDR HVKSLSCGSN FTSSICIHKW
0601: VSGADQSICS GCRQAFGFTR KRHNCYNCGL VHCHACSSKK ALKAALAPTP GKPHRVCDAC YSKLKAAESG YSSNVNRNVA TPGRSIDGSV RTDRETTRSS
0701: KVLLSANKNS VMSSSRPGFT PESSNARASQ VPSLQQLKDI AFPSSLSAIQ NAFKPVVAPT TTPPRTLVIG PSSPSPPPPP RSSSPYARRP SPPRTSGFSR
0801: SVIDSLRKTN EVMNQEMTKL HSQVKNLKQR CNNQGTEIER FQKAAKDASE LAARQSSKHK AATEALKSVA EQLKELKEKL PPEVSESEAF ESINSQAEAY
0901: LNANKVSETS PLTTSGQEQE TYQKTEEQVP SNSSITETSS SSRAPSTEAS SSRISGKESK EQFEPGVYVT YEVDMNGNKI FRRVRFSKKR FDEHQAEDWW
1001: TKNKDRLLKC YSSNSSSSSS SSNPTASDSP VAPQPPSDPS VPEQSNEKEP DSET

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.