CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004253.1-P	Field mustard	plastid	97.49	97.3
CDX96062	Canola	plastid	97.29	97.1
CDY28863	Canola	cytosol	85.11	84.62
CDY56518	Canola	cytosol, plastid	84.53	84.04
CDY39172	Canola	cytosol	61.32	64.43
CDY04192	Canola	cytosol	61.12	64.23
CDX83586	Canola	cytosol, plastid	65.38	63.89
CDY13609	Canola	cytosol	64.8	63.33
CDX99731	Canola	cytosol, plastid	63.83	61.68
CDY40988	Canola	cytosol, plastid	63.06	59.38
CDY56827	Canola	cytosol	24.56	26.62
CDX97668	Canola	cytosol	24.37	26.42
CDY43762	Canola	cytosol	20.31	24.53
CDX69479	Canola	cytosol	18.57	24.18
CDY34733	Canola	cytosol	15.67	24.18
CDY26488	Canola	cytosol	18.38	23.87
CDY31347	Canola	cytosol	19.92	23.62
CDX81201	Canola	cytosol	19.92	23.41
CDX84451	Canola	cytosol	20.12	23.32
CDY60046	Canola	cytosol	20.12	23.21
CDY16215	Canola	cytosol	16.63	22.28
CDY39843	Canola	cytosol	17.41	22.28
CDY69131	Canola	cytosol	13.73	22.12
CDY40735	Canola	mitochondrion	18.57	21.97
CDY44785	Canola	mitochondrion	18.38	21.94
CDY46423	Canola	cytosol	16.05	21.9
CDY57523	Canola	cytosol	19.73	21.66
CDY43240	Canola	cytosol	19.73	21.61
CDY02190	Canola	mitochondrion	13.93	16.25
CDY51633	Canola	mitochondrion	13.93	16.22
CDY20113	Canola	endoplasmic reticulum, extracellular	24.95	15.64
CDY70949	Canola	cytosol	10.64	15.54
CDY21840	Canola	endoplasmic reticulum, extracellular	24.76	15.5
CDY66504	Canola	cytosol	23.21	14.55
CDX77871	Canola	cytosol	23.79	12.96
CDY21795	Canola	cytosol	23.79	12.85
CDY47138	Canola	cytosol	25.53	12.61
CDY11586	Canola	cytosol	25.53	12.54
CDY31624	Canola	cytosol	23.79	12.51
CDX88324	Canola	cytosol	25.34	12.35
CDY14709	Canola	nucleus	16.44	12.3
CDX87557	Canola	cytosol	25.34	12.21
CDX97187	Canola	nucleus	24.95	12.19
CDX87989	Canola	cytosol	23.6	12.18
CDY28580	Canola	plasma membrane	24.56	12.16
CDY44086	Canola	plasma membrane, vacuole	24.56	12.07
CDX85690	Canola	nucleus	24.95	12.06
CDX69686	Canola	nucleus	24.95	12.06
CDX91165	Canola	nucleus	24.95	12.02
CDY48550	Canola	cytosol	22.63	11.94
CDX85076	Canola	cytosol	23.79	11.85
CDX92532	Canola	nucleus	25.53	11.85
CDY13998	Canola	nucleus	25.15	11.65
CDY12764	Canola	cytosol	23.6	11.64
CDX88891	Canola	cytosol, mitochondrion, nucleus	25.53	11.63
CDX70876	Canola	cytosol	24.56	11.39
CDX77534	Canola	cytosol	23.6	10.98
CDY49416	Canola	cytosol	23.6	10.9
CDX87986	Canola	cytosol	4.06	10.19
CDX68076	Canola	cytosol	12.57	7.83

Protein Annotations

EnsemblPlants:CDY01845	EnsemblPlantsGene:GSBRNA2T00113018001	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	PFAM:PF00415	PFscan:PS50012	PRINTS:PR00633
ProteinID:CDY01845	ProteinID:CDY01845.1	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI0004EDC5FF
MapMan:35.1	:	:	:	:	:

Description

BnaC06g28850D

Coordinates

chrLK031929:+:813460..816138

Molecular Weight (calculated)

55376.1 Da

IEP (calculated)

6.141

GRAVY (calculated)

-0.062

Length

517 amino acids

Sequence
(BLAST)

001: MDTTTSNSIV SPSTTLQLCS IIPENPLAAM ELPLLPSFLS LKRHCLGNSS APGEFFLASC PSIATCSFFR KPANFSPDLQ LSISEVAALD ICQKKSVFER
101: MGEEDRQEIK RKCGGSWKLV LRFLLAGELG CRREKSQALA GPGHSIAVTS KGVVYSFGSN TSGQLGQGTI EDTWQPRPIR SLSGIRIIQA AIGADRTMLI
201: SDAGEVYAFG KDCFSQPGLE DQDTKLITTP QRVKSLTEIF VVQAAIGYHF TAVLSREGRV YTLSWGKDER LGHGSDRNCV LPHPLLGALE NIPVVQIAAG
301: FCYLLALACQ PTGMSVYSVG CGLGGKLGHG TQTSEKQPRL IEEFSVLKME PVMISAGTWH AAAVGRDGRV CTWGWGRFGC LGHGTGESEL VPKVVEGLKD
401: VKAVHVATGD YTTFVVSDDG QVYSFGSGEF ANLGQQGDED DNTVTPNLVS SLKEIKERVV HVSLTNSISW GGHTFAMTES GTVYAFGTGD RGQLGVELGD
501: NLTERAEPAK VVGINLS

Best Arabidopsis Sequence Match ( AT3G26100.1 )
(BLAST)

001: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
101: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
201: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
301: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
401: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.