CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008895.1-P	Field mustard	nucleus	98.22	98.78
CDX97187	Canola	nucleus	95.7	96.79
CDX91165	Canola	nucleus	93.83	93.57
CDX85690	Canola	nucleus	93.46	93.46
AT5G12350.1	Thale cress	nucleus	93.46	93.02
CDX92532	Canola	nucleus	84.86	81.51
CDX70876	Canola	cytosol	84.86	81.44
CDX88891	Canola	cytosol, mitochondrion, nucleus	86.36	81.41
CDY13998	Canola	nucleus	84.3	80.82
KRH14571	Soybean	nucleus	79.72	77.06
KRH73555	Soybean	nucleus	79.35	76.62
VIT_06s0009g03550.t01	Wine grape	nucleus	78.78	76.15
KRG99075	Soybean	nucleus	78.13	75.59
Solyc11g065120.1.1	Tomato	cytosol	78.6	74.49
KRH45937	Soybean	nucleus	77.2	74.48
Solyc12g099740.1.1	Tomato	nucleus	69.81	72.88
HORVU0Hr1G028990.2	Barley	cytosol	26.64	72.33
GSMUA_Achr5P08220_001	Banana	cytosol	73.08	71.09
Zm00001d042074_P001	Maize	cytosol	72.24	70.85
Os05t0384800-01	Rice	cytosol	71.5	70.44
TraesCS1D01G240700.1	Wheat	cytosol	71.78	70.27
TraesCS1B01G252700.2	Wheat	cytosol	71.78	70.14
TraesCS1A01G240600.2	Wheat	cytosol	71.87	70.1
KXG34127	Sorghum	cytosol	59.63	69.2
Zm00001d011851_P001	Maize	cytosol	72.24	69.14
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	60.37	69.09
TraesCS3B01G543500.1	Wheat	cytosol	70.0	68.78
TraesCS3D01G489600.1	Wheat	cytosol	69.81	68.59
HORVU1Hr1G056870.2	Barley	cytosol, endoplasmic reticulum, nucleus	71.96	68.44
HORVU3Hr1G107820.4	Barley	endoplasmic reticulum	68.69	66.88
Os01t0952300-00	Rice	cytosol	70.09	65.62
CDY66504	Canola	cytosol	39.91	51.76
CDY47138	Canola	cytosol	50.47	51.58
CDY11586	Canola	cytosol	50.19	51.0
CDY70949	Canola	cytosol	16.82	50.85
CDX88324	Canola	cytosol	49.25	49.67
CDX87557	Canola	cytosol	48.97	48.84
CDY48550	Canola	cytosol	44.49	48.57
CDY28580	Canola	plasma membrane	46.54	47.7
CDX87986	Canola	cytosol	9.16	47.57
CDY44086	Canola	plasma membrane, vacuole	46.73	47.53
CDX68076	Canola	cytosol	35.33	45.54
CDX77871	Canola	cytosol	40.37	45.52
CDY21795	Canola	cytosol	40.19	44.93
CDX85076	Canola	cytosol	43.08	44.41
CDY12764	Canola	cytosol	42.99	43.89
CDX77534	Canola	cytosol	43.36	41.76
CDY49416	Canola	cytosol	42.99	41.11
CDY31624	Canola	cytosol	35.98	39.17
CDX87989	Canola	cytosol	35.7	38.12
CDY31347	Canola	cytosol	14.58	35.78
CDY69131	Canola	cytosol	10.56	35.2
CDY43762	Canola	cytosol	13.93	34.81
CDY46423	Canola	cytosol	12.24	34.56
CDX81201	Canola	cytosol	14.21	34.55
CDY60046	Canola	cytosol	14.39	34.38
CDY39843	Canola	cytosol	12.9	34.16
CDX84451	Canola	cytosol	13.93	33.41
CDY16215	Canola	cytosol	11.87	32.9
CDY44785	Canola	mitochondrion	12.34	30.48
CDY40735	Canola	mitochondrion	12.15	29.75
CDY34733	Canola	cytosol	9.16	29.25
CDY02190	Canola	mitochondrion	11.78	28.44
CDY51633	Canola	mitochondrion	11.78	28.38
CDY43240	Canola	cytosol	12.24	27.75
CDY57523	Canola	cytosol	12.15	27.6
CDX69479	Canola	cytosol	10.09	27.2
CDY26488	Canola	cytosol	10.0	26.88
CDX97668	Canola	cytosol	11.59	26.0
CDY56827	Canola	cytosol	11.59	26.0
CDX96062	Canola	plastid	12.15	25.1
CDY04192	Canola	cytosol	11.5	25.0
CDY39172	Canola	cytosol	11.5	25.0
CDY01845	Canola	plastid	12.06	24.95
CDY28863	Canola	cytosol	11.78	24.23
CDY13609	Canola	cytosol	11.96	24.2
CDY56518	Canola	cytosol, plastid	11.68	24.04
CDX83586	Canola	cytosol, plastid	11.78	23.82
CDX99731	Canola	cytosol, plastid	11.78	23.55
CDY40988	Canola	cytosol, plastid	11.5	22.4
CDY14709	Canola	nucleus	12.62	19.54
CDY20113	Canola	endoplasmic reticulum, extracellular	12.24	15.88
CDY21840	Canola	endoplasmic reticulum, extracellular	11.87	15.38

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078BY83	InterPro:BRX_N
InterPro:Brevis_radix_dom	EnsemblPlants:CDX69686	ProteinID:CDX69686	ProteinID:CDX69686.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00135714001	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091
InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	PFAM:PF00415	PFAM:PF01363
PFAM:PF08381	PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633
ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF301
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903
UniParc:UPI0004EF0EB2	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaA10g20350D

Coordinates

chrLK031790:-:1398293..1403012

Molecular Weight (calculated)

117055.0 Da

IEP (calculated)

9.339

GRAVY (calculated)

-0.535

Length

1070 amino acids

Sequence
(BLAST)

0001: MSRSGSMASD LSRAGPVERD IEQAIIALKK GAYLLKYGRR GKPKFCPFRL SNDETVLIWF SGKEEKHLKL SHVSRIISGQ RTPIFQRYPR PDKEYQSFSL
0101: IYSERSLDVI CKDKDEAEVW FSGLKALISR YHQRNRRTES RSDGTPSEAN SPRTYTRRSS PLHSPFSSND SLHRDGSNNL RIHSPFESPP QLDKALSEMA
0201: LYAVPPKGFY PSDSGTISVH SGGSDSMHGH MRGMGVDAFR VSMSSAVSGS SHGSGHDDGD ALGDVFIWGE GIGEGVLGGG NRRVGSSFDI KMDSLLPKAL
0301: ESTVVLDVQN IACGGQHAVL VTKQGESFSW GEESEGRLGH GVDSNIQHPK LIDALNTTNI ELVACGEFHS CAVTLSGDLY TWGKGDFGVL GHGNEVSHWV
0401: PKRVNFLFEG IHVSSIACGP YHTAVVTSAG QLFTFGDGTF GVLGHGDRKS VFIPREVDSL KGLRTVRAAC GVWHTAAIVE VMVGSSSSSN CSSGKLFTWG
0501: DGDKCRLGHG NKEPKLVPTC VAALVEPNFC QVACGHSLTV ALTTSGQVYT MGSPVYGQLG NSHADGKVPN RVEGKLHKNF VEEIACGAYH VAVLTARTEV
0601: YTWGKGSNGR LGHGDVDDRN SPTLVESLKD KQVKSIACGT NFTAAVCIHR WASGMDQSMC SGCRQPFNFK RKRHNCYNCG LVFCHSCSNK KSLKACMAPN
0701: PNKPYRVCDK CFNKLKKTME TDGSSHSSLS RRGSINQGSD PTDNDDKLDS RSDGQLARFS LIDSKRQVDS GNKKNKKYEF SSSRVSPIPS RSSQRGALNI
0801: AKTFNPVFGA SKKFFSASVP GSRIVSRATS PISRRPSPPR STTPTPTLSG LTTPRIVVDD TKRTNDNISQ EVVKLRSQVE SLTRKAQFQE VELERTAKQL
0901: KEALAIASEE TTRCTAAKEV IKSLTAQLKD MAERLPVGTA RTVKSPSSLN SFGSSPGRVD HFNILNRQNG QGPEPNTPMF SNGTTTPVFG NGEARNEAQN
1001: EKEWVEQDEP GVYITLTALA GGVRDLKRVR FSRKRFSEKQ AEQWWADNRG RVYEQYNVRM VDKTSEEMPR

Best Arabidopsis Sequence Match ( AT5G12350.1 )
(BLAST)

0001: MSRNGRMASD LSRAGPVERD IEQAIIALKK GAYLLKYGRR GKPKFCPFRL SNDETVLIWF SGNEEKHLKL SHVSRIISGQ RTPIFQRYPR PEKEYQSFSL
0101: IYSERSLDVI CKDKDEAEVW FTGLKALISH CHQRNRRTES RSDGTPSEAN SPRTYTRRSS PLHSPFSSND SLQKDGSNHL RIHSPFESPP KNGLDKAFSD
0201: MALYAVPPKG FYPSDSATIS VHSGGSDSMH GHMRGMGMDA FRVSMSSAVS SSSHGSGHDD GDALGDVFIW GEGIGEGVLG GGNRRVGSSF DIKMDSLLPK
0301: ALESTIVLDV QNIACGGQHA VLVTKQGESF SWGEESEGRL GHGVDSNIQQ PKLIDALNTT NIELVACGEF HSCAVTLSGD LYTWGKGDFG VLGHGNEVSH
0401: WVPKRVNFLL EGIHVSSIAC GPYHTAVVTS AGQLFTFGDG TFGVLGHGDK KSVFIPREVD SLKGLRTVRA ACGVWHTAAV VEVMVGSSSS SNCSSGKLFT
0501: WGDGDKGRLG HGNKEPKLVP TCVAALVEPN FCQVACGHSL TVALTTSGHV YTMGSPVYGQ LGNSHADGKT PNRVEGKLHK SFVEEIACGA YHVAVLTSRT
0601: EVYTWGKGSN GRLGHGDVDD RNSPTLVESL KDKQVKSIAC GTNFTAAVCI HRWASGMDQS MCSGCRQPFS FKRKRHNCYN CGLVFCHSCT SKKSLKACMA
0701: PNPNKPYRVC DKCFNKLKKT METDPSSHSS LSRRGSINQG SDPIDKDDKF DSRSDGQLAR FSLMESMRQV DSRHKKNKKY EFNSSRVSPI PSGSSQRGAL
0801: NIAKSFNPVF GASKKFFSAS VPGSRIVSRA TSPISRRPSP PRSTTPTPTL SGLATPKFVV DDTKRTNDNL SQEVVKLRSQ VESLTRKAQL QEVELERTTK
0901: QLKEALAITN EETTRCKAAK EVIKSLTAQL KDMAERLPVG SARTVKSPPS LNSFGSSPGR IDPFNILNQA NSQESEPNGI TTPMFSNGTM TPAFGNGEAT
1001: NEARNEKEWV EQDEPGVYIT LTALAGGARD LKRVRFSRKR FSEIQAEQWW ADNRGRVYEQ YNVRMVDKAS EDLPR

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K0X5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.