CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04192	Canola	cytosol	98.37	98.37
CDY13609	Canola	cytosol	92.48	86.01
CDX83586	Canola	cytosol, plastid	92.28	85.82
CDX99731	Canola	cytosol, plastid	91.87	84.49
AT3G26100.5	Thale cress	cytosol, plastid	90.24	83.46
CDY40988	Canola	cytosol, plastid	90.45	81.06
VIT_01s0137g00230.t01	Wine grape	cytosol	82.32	75.84
KRG97505	Soybean	cytosol	81.5	74.95
KRH31377	Soybean	cytosol	79.67	73.82
Solyc05g014030.2.1	Tomato	cytosol	79.67	73.55
PGSC0003DMT400027900	Potato	cytosol	79.67	73.55
GSMUA_AchrUn_...	Banana	cytosol, plastid	79.06	72.44
Os12t0284000-01	Rice	cytosol	78.25	72.1
PGSC0003DMT400016865	Potato	cytosol, extracellular, plastid	24.8	70.52
HORVU5Hr1G034530.6	Barley	cytosol	76.42	70.41
GSMUA_Achr9P02110_001	Banana	plastid	76.63	70.07
KRH59226	Soybean	cytosol	74.39	68.54
TraesCS5D01G123500.1	Wheat	mitochondrion, plastid	29.07	64.13
CDX96062	Canola	plastid	65.04	61.78
CDY28863	Canola	cytosol	64.84	61.35
CDY01845	Canola	plastid	64.43	61.32
CDY56518	Canola	cytosol, plastid	64.63	61.15
CDX97668	Canola	cytosol	26.22	27.04
CDY56827	Canola	cytosol	26.22	27.04
CDX69479	Canola	cytosol	20.93	25.94
CDY34733	Canola	cytosol	17.48	25.67
CDY26488	Canola	cytosol	20.73	25.63
CDY43762	Canola	cytosol	21.75	25.0
CDX84451	Canola	cytosol	21.95	24.22
CDX81201	Canola	cytosol	21.34	23.86
CDY60046	Canola	cytosol	21.54	23.66
CDY31347	Canola	cytosol	20.93	23.62
CDY69131	Canola	cytosol	15.24	23.36
CDY46423	Canola	cytosol	16.87	21.9
CDY16215	Canola	cytosol	17.07	21.76
CDY39843	Canola	cytosol	17.68	21.53
CDY57523	Canola	cytosol	19.31	20.17
CDY43240	Canola	cytosol	19.31	20.13
CDY40735	Canola	mitochondrion	17.28	19.45
CDY44785	Canola	mitochondrion	17.07	19.4
CDY02190	Canola	mitochondrion	16.46	18.28
CDY51633	Canola	mitochondrion	16.46	18.24
CDY20113	Canola	endoplasmic reticulum, extracellular	26.42	15.76
CDY21840	Canola	endoplasmic reticulum, extracellular	26.22	15.62
CDY66504	Canola	cytosol	24.19	14.42
CDY70949	Canola	cytosol	10.16	14.12
CDX77871	Canola	cytosol	23.98	12.43
CDY21795	Canola	cytosol	23.98	12.33
CDY14709	Canola	nucleus	17.28	12.3
CDY48550	Canola	cytosol	24.19	12.14
CDY47138	Canola	cytosol	25.81	12.13
CDY11586	Canola	cytosol	25.81	12.06
CDX88324	Canola	cytosol	25.61	11.88
CDX87557	Canola	cytosol	25.61	11.74
CDX91165	Canola	nucleus	25.2	11.56
CDX97187	Canola	nucleus	24.8	11.53
CDX85690	Canola	nucleus	25.0	11.5
CDX69686	Canola	nucleus	25.0	11.5
CDX85076	Canola	cytosol	24.19	11.46
CDY12764	Canola	cytosol	24.39	11.45
CDX88891	Canola	cytosol, mitochondrion, nucleus	26.02	11.28
CDX92532	Canola	nucleus	25.41	11.22
CDY28580	Canola	plasma membrane	23.78	11.21
CDY44086	Canola	plasma membrane, vacuole	23.78	11.12
CDX70876	Canola	cytosol	25.0	11.03
CDY13998	Canola	nucleus	25.0	11.02
CDY31624	Canola	cytosol	21.95	10.99
CDX87989	Canola	cytosol	22.15	10.88
CDY49416	Canola	cytosol	24.39	10.72
CDX77534	Canola	cytosol	24.19	10.71
CDX87986	Canola	cytosol	4.07	9.71
CDX68076	Canola	cytosol	11.99	7.11

Protein Annotations

Gene3D:2.130.10.30	MapMan:35.1	UniProt:A0A078HMS1	EnsemblPlants:CDY39172	ProteinID:CDY39172	ProteinID:CDY39172.1
EnsemblPlantsGene:GSBRNA2T00067366001	InterPro:IPR000408	InterPro:IPR009091	PFAM:PF00415	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SUPFAM:SSF50985
UniParc:UPI0004EE302E	SEG:seg	:	:	:	:

Description

BnaC09g21720DBnaC09g21720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMS1]

Coordinates

chrLK032442:-:179487..181651

Molecular Weight (calculated)

52765.7 Da

IEP (calculated)

6.602

GRAVY (calculated)

-0.153

Length

492 amino acids

Sequence
(BLAST)

001: MDATTSGTPA SPSIVLHVLT ECRLDPHDLA NLEATCSFFS QPANFAPDCS LSLPELAALD MCNKRMIFKP MKEEEREGMK RRCGGSWKLV LRFLLAGEAS
101: CRREKSQAIA GPGHSVAVTS KGQVYTFGYN NSGQLGHGHT DEEPRILPVR SLQGIRIIQA AAGAGRTMLI SDNGSVYACG KDLFGEAEYG GQGSRPVTTP
201: QLVASLKHIF VVQAAIGNFF TAILSREGKV YTFSWGNDGR LGHQTEANDL EPRPLLGPLE NVPVVQIAAG YCYLLALTCQ PNGMSVYSVG CGLGGKLGHG
301: SKTDEKYPRV IEQFQVLNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES VPKVVEGLSH VKAVHVATGD YTTFVVSEDG DVYSFGCGES
401: ASLGHHPVLD EQGNRHGNVL SPAVVTSLKQ AKERVVQISL TNSIYWNAHT FALTESGKLF AFGAGDKGQL GAELGRDLTE RCVPEKVDID LS

Best Arabidopsis Sequence Match ( AT3G26100.1 )
(BLAST)

001: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
101: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
201: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
301: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
401: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.