Factsheet for PGSC0003DMT400027900

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 4
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g014030.2.1	Tomato	cytosol	98.31	98.31
KRG97505	Soybean	cytosol	83.86	83.55
VIT_01s0137g00230.t01	Wine grape	cytosol	83.49	83.33
KRH31377	Soybean	cytosol	82.36	82.67
PGSC0003DMT400016865	Potato	cytosol, extracellular, plastid	26.45	81.5
CDY39172	Canola	cytosol	73.55	79.67
CDY04192	Canola	cytosol	73.17	79.27
AT3G26100.5	Thale cress	cytosol, plastid	78.99	79.14
CDX83586	Canola	cytosol, plastid	78.42	79.02
Bra025182.1-P	Field mustard	cytosol	78.24	78.83
CDY13609	Canola	cytosol	78.05	78.64
GSMUA_AchrUn_...	Banana	cytosol, plastid	78.99	78.4
Os12t0284000-01	Rice	cytosol	77.86	77.72
Bra017335.1-P	Field mustard	cytosol	77.11	77.4
CDX99731	Canola	cytosol, plastid	76.17	75.89
HORVU5Hr1G034530.6	Barley	cytosol	75.98	75.84
KRH59226	Soybean	cytosol	75.42	75.28
GSMUA_Achr9P02110_001	Banana	plastid	75.8	75.09
Bra036349.1-P	Field mustard	cytosol, plastid	75.8	73.59
CDY40988	Canola	cytosol, plastid	75.42	73.22
TraesCS5D01G123500.1	Wheat	mitochondrion, plastid	29.83	71.3
PGSC0003DMT400003817	Potato	cytosol	21.76	30.37
PGSC0003DMT400032346	Potato	plasma membrane	24.39	26.97
PGSC0003DMT400032945	Potato	extracellular	17.45	23.79
PGSC0003DMT400045467	Potato	cytosol	15.95	21.41
PGSC0003DMT400003726	Potato	cytosol	17.64	20.17
PGSC0003DMT400059356	Potato	cytosol	25.7	13.29
PGSC0003DMT400002081	Potato	cytosol	24.2	11.46
PGSC0003DMT400043094	Potato	nucleus	22.7	11.25
PGSC0003DMT400034994	Potato	cytosol	21.76	11.21
PGSC0003DMT400001620	Potato	cytosol	3.75	5.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400027900	EnsemblPlantsGene:PGSC0003DMG400010739	EntrezGene:102597693	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	PFAM:PF00415	PFscan:PS50012
PGSC:PGSC0003DMG400010739	PRINTS:PR00633	RefSeq:XP_006341781.1	RefSeq:XP_006341782.1	ScanProsite:PS00626	SEG:seg
SUPFAM:SSF50985	UniParc:UPI00029641B5	UniProt:M1AQB8	MapMan:35.1	:	:

Description

RCC1 and BTB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010739]

Coordinates

chr5:-:11252622..11256056

Molecular Weight (calculated)

57032.4 Da

IEP (calculated)

6.389

GRAVY (calculated)

-0.104

Length

533 amino acids

Sequence
(BLAST)

001: MDASTSGTSS VQYHNIAEQP IAATIVNSTF QRQVRHCFGN ATPGEFPLSA NPSIVLHVLT GCNLDPQDLA TLEATCSFFR QPANFAPDNE LSLAELAALD
101: MCRKRAIFKP MTQEQCHDLK LKCGGSWKLV LRFLLAGEAC SRREKSHAVA GPGHSIAVSS KGVAYSFGSN SSGQLGNGTT EEEWRPHPIR SLQGIRVIQA
201: AVGAGRTMLI SDTGKVYAFG KESFGEAEYG IQGSKVVTTP QLVESLKDIF VVQAAIGNFF TAVLSREGRV YTFSWGNETK LGHQTEQADL EPRPLLGALE
301: NIPVVQIAAG YCYLLALACQ PSGMSVYSVG CGLGGKLGHG TRTDEKVPRL IEQFQTLNIQ PAVVAAGAWH AAVVGKDGRV CTWGWGRYGC LGHGNEDCES
401: APKVVEALSN VKAVYVATGD YTTFVVSDDG SVYSFGCGES SSLGHNTAAA EAQGNRHSNV LFPEVVTSLK QLNERVVQIS LTNSIYWNAH TFALTESGKL
501: YAFGAGDKGQ LGVELSANQT ERAIPERIDI DLS

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.