CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31377	Soybean	cytosol	96.64	97.36
VIT_01s0137g00230.t01	Wine grape	cytosol	88.78	88.95
PGSC0003DMT400027900	Potato	cytosol	83.55	83.86
Solyc05g014030.2.1	Tomato	cytosol	83.36	83.68
KRH59226	Soybean	cytosol	82.24	82.4
CDY04192	Canola	cytosol	74.95	81.5
CDY39172	Canola	cytosol	74.95	81.5
GSMUA_AchrUn_...	Banana	cytosol, plastid	81.5	81.19
Bra025182.1-P	Field mustard	cytosol	80.0	80.91
CDY13609	Canola	cytosol	80.0	80.91
CDX83586	Canola	cytosol, plastid	79.81	80.72
Os12t0284000-01	Rice	cytosol	80.37	80.52
Bra017335.1-P	Field mustard	cytosol	79.81	80.41
AT3G26100.5	Thale cress	cytosol, plastid	79.81	80.26
CDX99731	Canola	cytosol, plastid	78.69	78.69
HORVU5Hr1G034530.6	Barley	cytosol	78.5	78.65
GSMUA_Achr9P02110_001	Banana	plastid	77.76	77.32
Bra036349.1-P	Field mustard	cytosol, plastid	78.69	76.68
CDY40988	Canola	cytosol, plastid	78.69	76.68
PGSC0003DMT400016865	Potato	cytosol, extracellular, plastid	23.36	72.25
TraesCS5D01G123500.1	Wheat	mitochondrion, plastid	29.72	71.3
KRH22127	Soybean	cytosol	25.23	27.84
KRH27216	Soybean	cytosol	25.42	26.93
KRG93861	Soybean	nucleus	18.88	25.57
KRH40960	Soybean	cytosol	15.33	24.26
KRH59606	Soybean	cytosol	19.63	24.03
KRH49501	Soybean	cytosol	7.29	22.54
KRH08750	Soybean	cytosol	26.36	22.14
KRH63955	Soybean	mitochondrion	17.01	21.82
KRH53944	Soybean	plastid	19.25	21.73
KRH30228	Soybean	cytosol	16.45	21.62
KRH63996	Soybean	nucleus	19.44	21.58
KRH01383	Soybean	cytosol	18.5	20.89
KRH53977	Soybean	cytosol, mitochondrion, nucleus	12.34	20.62
KRH45102	Soybean	cytosol, nucleus, peroxisome	18.13	20.46
KRH46563	Soybean	mitochondrion	14.77	17.79
KRH74759	Soybean	nucleus	17.57	16.7
KRH69375	Soybean	nucleus	17.57	15.91
KRH45886	Soybean	nucleus	24.67	13.87
KRG99075	Soybean	nucleus	27.66	13.38
KRH45937	Soybean	nucleus	27.1	13.07
KRH73555	Soybean	nucleus	26.92	13.0
KRH14571	Soybean	nucleus	26.73	12.92
KRH31700	Soybean	cytosol	25.61	12.71
KRH69117	Soybean	cytosol	25.61	12.71
KRG91629	Soybean	cytosol	25.79	12.57
KRH35179	Soybean	cytosol	26.17	12.5
KRG99112	Soybean	cytosol	22.8	12.45
KRH00393	Soybean	cytosol	24.67	12.35
KRH70333	Soybean	cytosol	25.79	12.32
KRH30884	Soybean	cytosol	24.3	12.1
KRG98005	Soybean	cytosol	23.74	11.87
KRH40796	Soybean	cytosol	15.33	10.93
KRH65503	Soybean	cytosol, mitochondrion, nucleus	19.81	10.13
KRH08736	Soybean	endoplasmic reticulum	10.28	7.89
KRH30227	Soybean	cytosol	3.74	4.43

Protein Annotations

EMBL:ACUP02010799	EnsemblPlants:KRG97505	EnsemblPlantsGene:GLYMA_18G012000	EntrezGene:100779690	Gene3D:2.130.10.30	InterPro:IPR000408
InterPro:IPR009091	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	PFAM:PF00415
PFscan:PS50012	PRINTS:PR00633	ProteinID:KRG97505	ProteinID:KRG97505.1	ScanProsite:PS00626	SEG:seg
SUPFAM:SSF50985	UniParc:UPI000233E56B	UniProt:I1MYL4	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr18:+:846958..851360

Molecular Weight (calculated)

57401.0 Da

IEP (calculated)

6.230

GRAVY (calculated)

-0.153

Length

535 amino acids

Sequence
(BLAST)

001: MDATTSGTPT VQYHNIPDQP ITAIIATPLP TFQRQQRHCF GDSTPGEFPL SANPSIVLHV LTACNLEPQD LAKLEATCSF FRQPANFAPD LDLSLSELAA
101: LDMCQKRAIF KPMTTEQRQD LKLRCGGSWK LALRYLMAGE ACCRREKSQA IAGPGHSIAV TSKGVVYSFG SNSSGQLGHG TTDEEWRPRP IRTLQGIRII
201: QAAAGAGRTM LVSDSGQVYA FGKDSFGEAE YGVQGSKTVA APQIVESLKN IFVVQAAIGN FFTAVLSREG RVYTFSWGSD GKLGHHTDQS DVEPHPLLGA
301: LENIPVVQIA AGYCYLLCLA CQPSGMSVYS VGCGLGGKLG HGSRTDEKYP RLIEQFGLLN LQPMVVAAGA WHAAVVGRDG RVCTWGWGRY GCLGHGNEEC
401: ESVPKVVEAL SNVKAVHVAT GDYTTFVVSD DGDVYSFGCG ESASLGHNAA GNDEQGNRHA NVLSPELVTS LKQINERVVQ ISLTNSIYWN AHTFALTESG
501: KLYAFGAGDK GQLGIELVAN QTERGNPERV EIDLG

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.