CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40988	Canola	cytosol, plastid	94.77	92.35
CDY04192	Canola	cytosol	84.67	92.07
CDY39172	Canola	cytosol	84.49	91.87
CDY13609	Canola	cytosol	89.91	90.93
CDX83586	Canola	cytosol, plastid	89.53	90.55
AT3G26100.5	Thale cress	cytosol, plastid	86.92	87.41
VIT_01s0137g00230.t01	Wine grape	cytosol	78.88	79.03
KRG97505	Soybean	cytosol	78.69	78.69
KRH31377	Soybean	cytosol	77.01	77.59
PGSC0003DMT400027900	Potato	cytosol	75.89	76.17
Solyc05g014030.2.1	Tomato	cytosol	75.89	76.17
Os12t0284000-01	Rice	cytosol	75.33	75.47
GSMUA_AchrUn_...	Banana	cytosol, plastid	75.7	75.42
HORVU5Hr1G034530.6	Barley	cytosol	74.21	74.34
GSMUA_Achr9P02110_001	Banana	plastid	73.27	72.86
KRH59226	Soybean	cytosol	71.22	71.35
PGSC0003DMT400016865	Potato	cytosol, extracellular, plastid	22.43	69.36
TraesCS5D01G123500.1	Wheat	mitochondrion, plastid	28.22	67.71
CDX96062	Canola	plastid	62.24	64.29
CDY01845	Canola	plastid	61.68	63.83
CDY28863	Canola	cytosol	61.87	63.65
CDY56518	Canola	cytosol, plastid	61.12	62.88
CDY56827	Canola	cytosol	24.11	27.04
CDX97668	Canola	cytosol	23.93	26.83
CDX69479	Canola	cytosol	19.25	25.94
CDY26488	Canola	cytosol	19.07	25.63
CDY34733	Canola	cytosol	15.51	24.78
CDY43762	Canola	cytosol	18.88	23.6
CDY69131	Canola	cytosol	13.83	23.05
CDX84451	Canola	cytosol	19.07	22.87
CDX81201	Canola	cytosol	18.69	22.73
CDY60046	Canola	cytosol	18.88	22.54
CDY31347	Canola	cytosol	18.32	22.48
CDY46423	Canola	cytosol	15.7	22.16
CDY16215	Canola	cytosol	15.7	21.76
CDY39843	Canola	cytosol	15.89	21.04
CDY40735	Canola	mitochondrion	16.82	20.59
CDY44785	Canola	mitochondrion	16.64	20.55
CDY57523	Canola	cytosol	17.57	19.96
CDY43240	Canola	cytosol	17.57	19.92
CDY02190	Canola	mitochondrion	15.7	18.96
CDY51633	Canola	mitochondrion	15.7	18.92
CDY20113	Canola	endoplasmic reticulum, extracellular	24.49	15.88
CDY70949	Canola	cytosol	10.47	15.82
CDY21840	Canola	endoplasmic reticulum, extracellular	24.3	15.74
CDY66504	Canola	cytosol	23.18	15.03
CDX77871	Canola	cytosol	22.62	12.75
CDY21795	Canola	cytosol	22.62	12.64
CDY47138	Canola	cytosol	24.49	12.51
CDY11586	Canola	cytosol	24.49	12.44
CDY14709	Canola	nucleus	15.89	12.3
CDX88324	Canola	cytosol	24.11	12.16
CDY12764	Canola	cytosol	23.74	12.12
CDX85076	Canola	cytosol	23.36	12.04
CDX87557	Canola	cytosol	23.93	11.93
CDX97187	Canola	nucleus	23.55	11.91
CDY28580	Canola	plasma membrane	23.18	11.88
CDX91165	Canola	nucleus	23.74	11.84
CDY44086	Canola	plasma membrane, vacuole	23.18	11.79
CDX85690	Canola	nucleus	23.55	11.78
CDX69686	Canola	nucleus	23.55	11.78
CDX88891	Canola	cytosol, mitochondrion, nucleus	24.49	11.54
CDY31624	Canola	cytosol	21.12	11.5
CDX92532	Canola	nucleus	23.93	11.49
CDY48550	Canola	cytosol	20.93	11.43
CDX70876	Canola	cytosol	23.74	11.39
CDX87989	Canola	cytosol	21.31	11.38
CDY49416	Canola	cytosol	23.74	11.35
CDY13998	Canola	nucleus	23.55	11.29
CDX77534	Canola	cytosol	23.18	11.16
CDX87986	Canola	cytosol	4.11	10.68
CDX68076	Canola	cytosol	12.34	7.95

Protein Annotations

EnsemblPlants:CDX99731	EnsemblPlantsGene:GSBRNA2T00108356001	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	ncoils:Coil	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	PFAM:PF00415	PFscan:PS50012
PRINTS:PR00633	ProteinID:CDX99731	ProteinID:CDX99731.1	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985
UniParc:UPI0004EE4151	MapMan:35.1	:	:	:	:

Description

BnaC02g35890D

Coordinates

chrLK031913:-:527062..529635

Molecular Weight (calculated)

57622.4 Da

IEP (calculated)

6.843

GRAVY (calculated)

-0.206

Length

535 amino acids

Sequence
(BLAST)

001: MDATTSGTQS LHCHNLPEQP VSSAASPPVT PFQRQKRQCF GDSTPGEFPL AANPSIVLHV LTECRLDPRD LANLEATCSF FSQPAHFAPD CSLSLPELAA
101: LDMCNKRMIF KPMSEQEREE MKRRCGGSWK LVLRYLLAGE ACCRREQSQA IAGPGHSIAV TSMGQVYTFG HNNSGQLGHG HTDEEARILP VRSMLGIRII
201: QAAAGAGRTM LISDNGSVYA CGKDLFGEAE YGGQGGSRQV TTPQLVTSLK NIFVVQAAIG NFFTAVLSRE GKVYTFSWGN DGRLGHQTEA NDVEPRPLLG
301: PLENVPVVQI AAGYCYLLAL ACQPNGMSVY SVGCGLGGKL GHGSKTDEKY PRVIKQFQLL NFQPRVVAAG AWHAAVVGQD GRVCTWGWGR YGCLGHGNEE
401: GESVPKVVEG LSHVKAVHVA TGDYTTFVVS EDGDVYSFGC GESASLGHHT AVYEQRDRQA NVLSPAVVTS LKQVKERVVQ ISLTNSIYWN AHTFALTESG
501: KVFAFGAGDK GQLGAELGRD QTERCAPERV NIDLS

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.