CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024664.1-P	Field mustard	cytosol	89.9	96.66
CDY46423	Canola	cytosol	82.9	84.43
CDY69131	Canola	cytosol	69.95	84.11
AT1G27060.1	Thale cress	cytosol	79.79	79.79
VIT_01s0026g01520.t01	Wine grape	cytosol	59.07	57.58
PGSC0003DMT400045467	Potato	cytosol	56.99	55.42
Solyc05g006940.2.1	Tomato	cytosol	56.48	55.33
CDY14709	Canola	nucleus	92.23	51.52
GSMUA_Achr6P29750_001	Banana	cytosol	51.81	50.38
TraesCS3D01G312300.1	Wheat	cytosol	49.48	46.93
Os01t0777800-01	Rice	cytosol	48.45	46.63
TraesCS3B01G347100.2	Wheat	cytosol	48.96	46.44
Zm00001d043280_P001	Maize	cytosol	48.96	46.32
OQU87663	Sorghum	cytosol	48.45	46.29
TraesCS3A01G319000.1	Wheat	cytosol	48.7	45.85
HORVU3Hr1G076310.2	Barley	cytosol, mitochondrion, nucleus	49.22	41.85
KRH74759	Soybean	nucleus	59.07	40.5
KRH69375	Soybean	nucleus	59.33	38.75
CDX69479	Canola	cytosol	25.39	24.69
CDY26488	Canola	cytosol	25.39	24.62
CDY34733	Canola	cytosol	21.24	24.48
CDY44785	Canola	mitochondrion	26.94	24.02
CDY40735	Canola	mitochondrion	26.94	23.8
CDY43762	Canola	cytosol	25.65	23.13
CDY39843	Canola	cytosol	23.58	22.52
CDX84451	Canola	cytosol	25.65	22.2
CDY60046	Canola	cytosol	25.65	22.1
CDY31347	Canola	cytosol	24.61	21.79
CDX81201	Canola	cytosol	24.61	21.59
CDY02190	Canola	mitochondrion	21.5	18.74
CDY51633	Canola	mitochondrion	21.5	18.69
CDY57523	Canola	cytosol	21.76	17.83
CDY43240	Canola	cytosol	21.76	17.8
CDX97668	Canola	cytosol	21.24	17.19
CDY39172	Canola	cytosol	21.76	17.07
CDY04192	Canola	cytosol	21.76	17.07
CDY56827	Canola	cytosol	20.98	16.98
CDY01845	Canola	plastid	22.28	16.63
CDY28863	Canola	cytosol	22.28	16.54
CDX96062	Canola	plastid	22.02	16.41
CDY56518	Canola	cytosol, plastid	21.76	16.15
CDX99731	Canola	cytosol, plastid	21.76	15.7
CDY13609	Canola	cytosol	21.5	15.69
CDX83586	Canola	cytosol, plastid	21.5	15.69
CDY66504	Canola	cytosol	32.64	15.27
CDY40988	Canola	cytosol, plastid	20.98	14.75
CDX87986	Canola	cytosol	7.25	13.59
CDX97187	Canola	nucleus	33.16	12.1
CDX85076	Canola	cytosol	32.12	11.95
CDY12764	Canola	cytosol	32.38	11.93
CDX69686	Canola	nucleus	32.9	11.87
CDX85690	Canola	nucleus	32.64	11.78
CDX91165	Canola	nucleus	32.38	11.65
CDY48550	Canola	cytosol	29.53	11.63
CDX77871	Canola	cytosol	28.5	11.59
CDY28580	Canola	plasma membrane	31.35	11.59
CDY44086	Canola	plasma membrane, vacuole	31.35	11.5
CDY21795	Canola	cytosol	28.5	11.49
CDX92532	Canola	nucleus	33.16	11.49
CDY13998	Canola	nucleus	32.9	11.38
CDX88891	Canola	cytosol, mitochondrion, nucleus	33.16	11.28
CDX77534	Canola	cytosol	32.38	11.25
CDY49416	Canola	cytosol	32.38	11.17
CDX70876	Canola	cytosol	31.61	10.94
CDY31624	Canola	cytosol	27.72	10.88
CDX88324	Canola	cytosol	29.79	10.84
CDX87557	Canola	cytosol	30.05	10.81
CDY70949	Canola	cytosol	9.84	10.73
CDX87989	Canola	cytosol	27.46	10.58
CDY11586	Canola	cytosol	28.76	10.54
CDY20113	Canola	endoplasmic reticulum, extracellular	22.28	10.42
CDY21840	Canola	endoplasmic reticulum, extracellular	22.28	10.41
CDY47138	Canola	cytosol	28.24	10.41
CDX68076	Canola	cytosol	14.25	6.63

Protein Annotations

EnsemblPlants:CDY16215	EnsemblPlantsGene:GSBRNA2T00090671001	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PFAM:PF00415	PFAM:PF13540	PFscan:PS50012	PRINTS:PR00633	ProteinID:CDY16215
ProteinID:CDY16215.1	ScanProsite:PS00626	SUPFAM:SSF50985	UniParc:UPI0004EF210B	UniProt:A0A078FP32	MapMan:35.1

Description

BnaA09g29490DBnaA09g29490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FP32]

Coordinates

chrLK032061:+:562469..564273

Molecular Weight (calculated)

40616.7 Da

IEP (calculated)

6.445

GRAVY (calculated)

-0.170

Length

386 amino acids

Sequence
(BLAST)

001: MAEHGGITPA PADEEEQVWS WGAGTDGQLG TAKLKDEHIP QLLSLTSLAS ISMLACGGAH VIALTSGGKV LTWGRGNSGQ LGHGDMLDSS LPKPVSFFDD
101: YVVTQASAGW SHSGFVSDSG CLFTCGNGSF GQLGHGDNMS LCSPAKVSYF ADKSVKMVAC GMRHSLVLFA GNQVCGFGSG KRGQLGFSSD KTKSLVNLPC
201: LVSGLEDVEV VRIAANGDHS AAISANGQMF SWGRGFCGSP DVQTPHCFHS SLSFRDVALG WNHALLLTAD GKVSKLGNTL NTQSDKQQLQ VDPSEPFLEK
301: VPGFDGVKVV QIAAGAEHSA AVTESGEVQT WGWGEHGQLG LGNTNDHNNP QLVSLGSIDH RTQETKVYCG SGFTYVVRRI QKRSSS

Best Arabidopsis Sequence Match ( AT1G27060.1 )
(BLAST)

001: MAEHGETQAD EEEEEQVWSW GAGTDGQLGT TKLQDELLPQ LLSLTSLPSI SMLACGGAHV IALTSGGKVF TWGRGSSGQL GHGDILNITL PKLVSFFDDS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS

Arabidopsis Description

At1g27060 [Source:UniProtKB/TrEMBL;Acc:A2RVN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.