Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024664.1-P | Field mustard | cytosol | 74.35 | 79.94 |
| CDY16215 | Canola | cytosol | 79.79 | 79.79 |
| CDY69131 | Canola | cytosol | 66.32 | 79.75 |
| CDY46423 | Canola | cytosol | 78.24 | 79.68 |
| Bra016304.1-P | Field mustard | cytosol | 75.91 | 79.4 |
| VIT_01s0026g01520.t01 | Wine grape | cytosol | 57.51 | 56.06 |
| PGSC0003DMT400045467 | Potato | cytosol | 55.7 | 54.16 |
| Solyc05g006940.2.1 | Tomato | cytosol | 54.66 | 53.55 |
| GSMUA_Achr6P29750_001 | Banana | cytosol | 50.0 | 48.61 |
| Os01t0777800-01 | Rice | cytosol | 48.45 | 46.63 |
| OQU87663 | Sorghum | cytosol | 48.7 | 46.53 |
| Zm00001d043280_P001 | Maize | cytosol | 48.7 | 46.08 |
| TraesCS3D01G312300.1 | Wheat | cytosol | 48.45 | 45.95 |
| TraesCS3B01G347100.2 | Wheat | cytosol | 47.93 | 45.45 |
| TraesCS3A01G319000.1 | Wheat | cytosol | 48.19 | 45.37 |
| CDY14709 | Canola | nucleus | 80.83 | 45.15 |
| HORVU3Hr1G076310.2 | Barley | cytosol, mitochondrion, nucleus | 47.93 | 40.75 |
| KRH74759 | Soybean | nucleus | 58.29 | 39.96 |
| KRH69375 | Soybean | nucleus | 59.59 | 38.92 |
| AT3G02510.1 | Thale cress | cytosol | 26.17 | 25.7 |
| AT5G16040.1 | Thale cress | cytosol | 26.17 | 25.51 |
| AT5G08710.1 | Thale cress | mitochondrion | 27.98 | 24.88 |
| AT5G63860.1 | Thale cress | cytosol | 25.65 | 22.5 |
| AT5G60870.2 | Thale cress | mitochondrion | 23.06 | 19.69 |
| AT3G15430.2 | Thale cress | cytosol | 23.06 | 18.24 |
| AT3G02300.2 | Thale cress | cytosol | 21.76 | 17.43 |
| AT3G26100.5 | Thale cress | cytosol, plastid | 23.32 | 16.92 |
| AT5G12350.1 | Thale cress | nucleus | 35.23 | 12.65 |
| AT3G23270.2 | Thale cress | cytosol | 34.46 | 12.62 |
| AT5G19420.2 | Thale cress | mitochondrion | 35.23 | 11.94 |
| AT4G14368.1 | Thale cress | cytosol | 32.38 | 11.3 |
| AT5G42140.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 31.09 | 11.13 |
| AT1G69710.1 | Thale cress | cytosol | 29.79 | 11.05 |
| AT3G47660.4 | Thale cress | cytosol | 27.98 | 10.91 |
| AT1G76950.1 | Thale cress | cytosol | 30.57 | 10.7 |
| AT1G65920.1 | Thale cress | cytosol | 27.2 | 10.44 |
Protein Annotations
| Gene3D:2.130.10.30 | MapMan:35.1 | EntrezGene:839595 | UniProt:A0A178W8A5 | UniProt:A2RVN2 | ProteinID:AEE30775.1 |
| ArrayExpress:AT1G27060 | EnsemblPlantsGene:AT1G27060 | RefSeq:AT1G27060 | TAIR:AT1G27060 | RefSeq:AT1G27060-TAIR-G | EnsemblPlants:AT1G27060.1 |
| TAIR:AT1G27060.1 | Unigene:At.50938 | EMBL:BT030023 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR000408 | InterPro:IPR009091 | RefSeq:NP_174026.1 | ProteinID:OAP13991.1 | PFAM:PF00415 |
| PO:PO:0000013 | PO:PO:0000293 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0025022 |
| PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | SUPFAM:SSF50985 |
| UniParc:UPI0000162ED7 | SEG:seg | : | : | : | : |
Description
At1g27060 [Source:UniProtKB/TrEMBL;Acc:A2RVN2]
Coordinates
chr1:+:9394907..9396673
Molecular Weight (calculated)
40732.8 Da
IEP (calculated)
5.192
GRAVY (calculated)
-0.136
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHGETQAD EEEEEQVWSW GAGTDGQLGT TKLQDELLPQ LLSLTSLPSI SMLACGGAHV IALTSGGKVF TWGRGSSGQL GHGDILNITL PKLVSFFDDS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.