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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 2
  • nucleus 1
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX77871 Canola cytosol 77.27 80.61
Bra019511.1-P Field mustard cytosol 77.47 80.15
CDY21795 Canola cytosol 77.37 80.04
VIT_17s0000g05980.t01 Wine grape endoplasmic reticulum 29.7 42.55
Solyc03g116360.1.1 Tomato cytosol 38.28 40.06
AT5G12350.1 Thale cress nucleus 42.22 38.88
AT5G19420.2 Thale cress mitochondrion 42.93 37.31
GSMUA_Achr4P00510_001 Banana cytosol 36.16 37.25
AT1G69710.1 Thale cress cytosol 38.28 36.41
TraesCS7B01G090600.1 Wheat cytosol 37.47 36.37
TraesCS7A01G185400.1 Wheat cytosol 37.17 36.36
TraesCS7D01G187100.3 Wheat cytosol 36.97 35.85
AT1G76950.1 Thale cress cytosol 38.59 34.63
PGSC0003DMT400001620 Potato cytosol 13.94 34.5
HORVU7Hr1G038070.12 Barley cytosol 32.32 33.93
AT5G42140.2 Thale cress cytosol, endoplasmic reticulum, nucleus 36.87 33.86
AT3G23270.2 Thale cress cytosol 34.04 31.97
AT4G14368.1 Thale cress cytosol 34.44 30.83
AT5G63860.1 Thale cress cytosol 13.33 30.0
AT1G65920.1 Thale cress cytosol 29.7 29.22
AT1G27060.1 Thale cress cytosol 10.91 27.98
AT5G08710.1 Thale cress mitochondrion 11.41 26.04
AT3G02300.2 Thale cress cytosol 12.32 25.31
GSMUA_Achr7P20980_001 Banana cytosol 36.87 25.12
AT5G60870.2 Thale cress mitochondrion 11.11 24.34
AT5G16040.1 Thale cress cytosol 9.49 23.74
AT3G15430.2 Thale cress cytosol 11.52 23.36
AT3G02510.1 Thale cress cytosol 9.19 23.16
AT3G26100.5 Thale cress cytosol, plastid 11.92 22.18
Protein Annotations
Gene3D:2.130.10.30Gene3D:3.30.40.10MapMan:35.1EntrezGene:823920UniProt:A0A1I9LLL5ProteinID:ANM63471.1
ProteinID:ANM63472.1ProteinID:ANM63473.1ArrayExpress:AT3G47660EnsemblPlantsGene:AT3G47660RefSeq:AT3G47660TAIR:AT3G47660
RefSeq:AT3G47660-TAIR-GEnsemblPlants:AT3G47660.4Unigene:At.66547ncoils:CoilGO:GO:0003674GO:GO:0005488
GO:GO:0005575GO:GO:0016020GO:GO:0016021GO:GO:0046872InterPro:IPR000408InterPro:IPR009091
InterPro:IPR013083InterPro:IPR017455RefSeq:NP_001325557.1RefSeq:NP_001325558.1RefSeq:NP_001325559.1PFAM:PF00415
PFAM:PF01363PRINTS:PR00633ScanProsite:PS00626PFscan:PS50012PFscan:PS50178PANTHER:PTHR22870
PANTHER:PTHR22870:SF244InterPro:RCC1/BLIP-IIInterPro:Reg_chr_condensSMART:SM00064SUPFAM:SSF50729SUPFAM:SSF50985
SUPFAM:SSF57903TMHMM:TMhelixUniParc:UPI0008490527InterPro:Znf_FYVEInterPro:Znf_FYVE-relInterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHDSEG:seg::::
Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLL5]
Coordinates
chr3:+:17571192..17574805
Molecular Weight (calculated)
108584.0 Da
IEP (calculated)
8.822
GRAVY (calculated)
-0.254
Length
990 amino acids
Sequence
(BLAST)
001: MRFSIRKLRS VPTDRENEQA IAILKKGAYL LKYGRRGKPK FYPFRLSSDE IYLLWYCGKK EKRLKLSSVT RIIPGQRTNF SRRFSDDILN PPRNINPFLL
101: YMANGLSIWY ARTRMKLSSG SLPFALFSHE TTLLHWYFTQ EAVVLLLKME NKVVRARTRS PTSDLSAVTQ AMRFCWLFSF FMIAPSGCFL LIIFLSHLAL
201: LQEHAKKASG SHCNTPQRLG KVFSEVLSQT AVLKALSLDE LVHKPHTSPP ETIENRPTNH SSPGVDTSKY SISSAVSSSS QGSTFEDLKS LCDVFVWGES
301: IGDGLLGGGM HKSGSSSSLM TDSFLPKVLK SHVALDAQSI SCGTNYAVLV TKQGQMYSWG EESGGRLGHG VCSYVPHPKL IDEFNGSTVE LADCGEFHTC
401: AVTASGDLYA WGDGDHNAGL LGLGSGASHW KPVRILGQME GIYVKAISCG PWHTAFVTSE GKLFTFGDGT FGALGHGDRI STNIPREVEA LNGCRTIKAA
501: CGVWHSAAVV SVFGEATSSG KLFTWGDGDD GRLGHGDIEC RLIPSCVTEL DTTSFQQVAC GQSITVALSM SGQVYAMGTA DPSHDIVRAP SCIEGGLGKS
601: FVQEVACGFH HIAVLNSKAE VYTWGKGSNG QLGHGDTEYR CMPTLVKALK GKQVRKVVCG SNYTATICLH KPITGTDSTK CSGCRHPFNY MRKLHNCYNC
701: GSVFCNSCTS KKSLAAAMAP KTNRPYRVCD DCYIKLEGIR ESLATPANSA RFSNASLPSS YEMDEIGITP QRQLLRVDSF DFFRQTKHAD LKTIGETSGG
801: SCTSSIHSNM DIKGSFNLKG IRRLSRLTSF DSVQEEGKQR TKHCASKSDT SSLIRHSVTC GLPFSRRGSV ELFPLSIKSS PVESVATTSD FTTDITDHEL
901: LQEVPKKSNQ CLSHEISVLK AQVEELTLKS KKLETELGKT SKKLEVAVLM ARDDAEKIKS SEEIVRSLTL QLMNTTKKEV DKTRRHRNSF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.