Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 1
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX77871 | Canola | cytosol | 77.27 | 80.61 |
Bra019511.1-P | Field mustard | cytosol | 77.47 | 80.15 |
CDY21795 | Canola | cytosol | 77.37 | 80.04 |
VIT_17s0000g05980.t01 | Wine grape | endoplasmic reticulum | 29.7 | 42.55 |
Solyc03g116360.1.1 | Tomato | cytosol | 38.28 | 40.06 |
AT5G12350.1 | Thale cress | nucleus | 42.22 | 38.88 |
AT5G19420.2 | Thale cress | mitochondrion | 42.93 | 37.31 |
GSMUA_Achr4P00510_001 | Banana | cytosol | 36.16 | 37.25 |
AT1G69710.1 | Thale cress | cytosol | 38.28 | 36.41 |
TraesCS7B01G090600.1 | Wheat | cytosol | 37.47 | 36.37 |
TraesCS7A01G185400.1 | Wheat | cytosol | 37.17 | 36.36 |
TraesCS7D01G187100.3 | Wheat | cytosol | 36.97 | 35.85 |
AT1G76950.1 | Thale cress | cytosol | 38.59 | 34.63 |
PGSC0003DMT400001620 | Potato | cytosol | 13.94 | 34.5 |
HORVU7Hr1G038070.12 | Barley | cytosol | 32.32 | 33.93 |
AT5G42140.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 36.87 | 33.86 |
AT3G23270.2 | Thale cress | cytosol | 34.04 | 31.97 |
AT4G14368.1 | Thale cress | cytosol | 34.44 | 30.83 |
AT5G63860.1 | Thale cress | cytosol | 13.33 | 30.0 |
AT1G65920.1 | Thale cress | cytosol | 29.7 | 29.22 |
AT1G27060.1 | Thale cress | cytosol | 10.91 | 27.98 |
AT5G08710.1 | Thale cress | mitochondrion | 11.41 | 26.04 |
AT3G02300.2 | Thale cress | cytosol | 12.32 | 25.31 |
GSMUA_Achr7P20980_001 | Banana | cytosol | 36.87 | 25.12 |
AT5G60870.2 | Thale cress | mitochondrion | 11.11 | 24.34 |
AT5G16040.1 | Thale cress | cytosol | 9.49 | 23.74 |
AT3G15430.2 | Thale cress | cytosol | 11.52 | 23.36 |
AT3G02510.1 | Thale cress | cytosol | 9.19 | 23.16 |
AT3G26100.5 | Thale cress | cytosol, plastid | 11.92 | 22.18 |
Protein Annotations
Gene3D:2.130.10.30 | Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:823920 | UniProt:A0A1I9LLL5 | ProteinID:ANM63471.1 |
ProteinID:ANM63472.1 | ProteinID:ANM63473.1 | ArrayExpress:AT3G47660 | EnsemblPlantsGene:AT3G47660 | RefSeq:AT3G47660 | TAIR:AT3G47660 |
RefSeq:AT3G47660-TAIR-G | EnsemblPlants:AT3G47660.4 | Unigene:At.66547 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | InterPro:IPR000408 | InterPro:IPR009091 |
InterPro:IPR013083 | InterPro:IPR017455 | RefSeq:NP_001325557.1 | RefSeq:NP_001325558.1 | RefSeq:NP_001325559.1 | PFAM:PF00415 |
PFAM:PF01363 | PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 | PFscan:PS50178 | PANTHER:PTHR22870 |
PANTHER:PTHR22870:SF244 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | SMART:SM00064 | SUPFAM:SSF50729 | SUPFAM:SSF50985 |
SUPFAM:SSF57903 | TMHMM:TMhelix | UniParc:UPI0008490527 | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD |
InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLL5]
Coordinates
chr3:+:17571192..17574805
Molecular Weight (calculated)
108584.0 Da
IEP (calculated)
8.822
GRAVY (calculated)
-0.254
Length
990 amino acids
Sequence
(BLAST)
(BLAST)
001: MRFSIRKLRS VPTDRENEQA IAILKKGAYL LKYGRRGKPK FYPFRLSSDE IYLLWYCGKK EKRLKLSSVT RIIPGQRTNF SRRFSDDILN PPRNINPFLL
101: YMANGLSIWY ARTRMKLSSG SLPFALFSHE TTLLHWYFTQ EAVVLLLKME NKVVRARTRS PTSDLSAVTQ AMRFCWLFSF FMIAPSGCFL LIIFLSHLAL
201: LQEHAKKASG SHCNTPQRLG KVFSEVLSQT AVLKALSLDE LVHKPHTSPP ETIENRPTNH SSPGVDTSKY SISSAVSSSS QGSTFEDLKS LCDVFVWGES
301: IGDGLLGGGM HKSGSSSSLM TDSFLPKVLK SHVALDAQSI SCGTNYAVLV TKQGQMYSWG EESGGRLGHG VCSYVPHPKL IDEFNGSTVE LADCGEFHTC
401: AVTASGDLYA WGDGDHNAGL LGLGSGASHW KPVRILGQME GIYVKAISCG PWHTAFVTSE GKLFTFGDGT FGALGHGDRI STNIPREVEA LNGCRTIKAA
501: CGVWHSAAVV SVFGEATSSG KLFTWGDGDD GRLGHGDIEC RLIPSCVTEL DTTSFQQVAC GQSITVALSM SGQVYAMGTA DPSHDIVRAP SCIEGGLGKS
601: FVQEVACGFH HIAVLNSKAE VYTWGKGSNG QLGHGDTEYR CMPTLVKALK GKQVRKVVCG SNYTATICLH KPITGTDSTK CSGCRHPFNY MRKLHNCYNC
701: GSVFCNSCTS KKSLAAAMAP KTNRPYRVCD DCYIKLEGIR ESLATPANSA RFSNASLPSS YEMDEIGITP QRQLLRVDSF DFFRQTKHAD LKTIGETSGG
801: SCTSSIHSNM DIKGSFNLKG IRRLSRLTSF DSVQEEGKQR TKHCASKSDT SSLIRHSVTC GLPFSRRGSV ELFPLSIKSS PVESVATTSD FTTDITDHEL
901: LQEVPKKSNQ CLSHEISVLK AQVEELTLKS KKLETELGKT SKKLEVAVLM ARDDAEKIKS SEEIVRSLTL QLMNTTKKEV DKTRRHRNSF
101: YMANGLSIWY ARTRMKLSSG SLPFALFSHE TTLLHWYFTQ EAVVLLLKME NKVVRARTRS PTSDLSAVTQ AMRFCWLFSF FMIAPSGCFL LIIFLSHLAL
201: LQEHAKKASG SHCNTPQRLG KVFSEVLSQT AVLKALSLDE LVHKPHTSPP ETIENRPTNH SSPGVDTSKY SISSAVSSSS QGSTFEDLKS LCDVFVWGES
301: IGDGLLGGGM HKSGSSSSLM TDSFLPKVLK SHVALDAQSI SCGTNYAVLV TKQGQMYSWG EESGGRLGHG VCSYVPHPKL IDEFNGSTVE LADCGEFHTC
401: AVTASGDLYA WGDGDHNAGL LGLGSGASHW KPVRILGQME GIYVKAISCG PWHTAFVTSE GKLFTFGDGT FGALGHGDRI STNIPREVEA LNGCRTIKAA
501: CGVWHSAAVV SVFGEATSSG KLFTWGDGDD GRLGHGDIEC RLIPSCVTEL DTTSFQQVAC GQSITVALSM SGQVYAMGTA DPSHDIVRAP SCIEGGLGKS
601: FVQEVACGFH HIAVLNSKAE VYTWGKGSNG QLGHGDTEYR CMPTLVKALK GKQVRKVVCG SNYTATICLH KPITGTDSTK CSGCRHPFNY MRKLHNCYNC
701: GSVFCNSCTS KKSLAAAMAP KTNRPYRVCD DCYIKLEGIR ESLATPANSA RFSNASLPSS YEMDEIGITP QRQLLRVDSF DFFRQTKHAD LKTIGETSGG
801: SCTSSIHSNM DIKGSFNLKG IRRLSRLTSF DSVQEEGKQR TKHCASKSDT SSLIRHSVTC GLPFSRRGSV ELFPLSIKSS PVESVATTSD FTTDITDHEL
901: LQEVPKKSNQ CLSHEISVLK AQVEELTLKS KKLETELGKT SKKLEVAVLM ARDDAEKIKS SEEIVRSLTL QLMNTTKKEV DKTRRHRNSF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.