Factsheet for AT3G26100.5

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39172	Canola	cytosol	83.46	90.24
CDY04192	Canola	cytosol	83.46	90.24
Bra025182.1-P	Field mustard	cytosol	89.66	90.17
CDY13609	Canola	cytosol	89.29	89.79
CDX83586	Canola	cytosol, plastid	89.1	89.6
Bra017335.1-P	Field mustard	cytosol	88.72	88.89
CDX99731	Canola	cytosol, plastid	87.41	86.92
Bra036349.1-P	Field mustard	cytosol, plastid	86.09	83.42
CDY40988	Canola	cytosol, plastid	85.9	83.24
VIT_01s0137g00230.t01	Wine grape	cytosol	80.64	80.34
KRG97505	Soybean	cytosol	80.26	79.81
Solyc05g014030.2.1	Tomato	cytosol	79.51	79.36
KRH31377	Soybean	cytosol	78.95	79.1
PGSC0003DMT400027900	Potato	cytosol	79.14	78.99
GSMUA_AchrUn_...	Banana	cytosol, plastid	76.69	75.98
Os12t0284000-01	Rice	cytosol	75.56	75.28
GSMUA_Achr9P02110_001	Banana	plastid	75.0	74.16
HORVU5Hr1G034530.6	Barley	cytosol	73.87	73.6
KRH59226	Soybean	cytosol	73.5	73.22
PGSC0003DMT400016865	Potato	cytosol, extracellular, plastid	23.12	71.1
TraesCS5D01G123500.1	Wheat	mitochondrion, plastid	28.2	67.26
AT3G15430.2	Thale cress	cytosol	24.81	27.05
AT5G16040.1	Thale cress	cytosol	19.36	26.01
AT3G02510.1	Thale cress	cytosol	19.17	25.95
AT5G63860.1	Thale cress	cytosol	19.74	23.86
AT1G27060.1	Thale cress	cytosol	16.92	23.32
AT5G08710.1	Thale cress	mitochondrion	17.29	21.2
AT3G02300.2	Thale cress	cytosol	16.73	18.46
AT5G60870.2	Thale cress	mitochondrion	14.85	17.48
AT3G23270.2	Thale cress	cytosol	24.81	12.52
AT1G69710.1	Thale cress	cytosol	24.06	12.3
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	24.81	12.24
AT3G47660.4	Thale cress	cytosol	22.18	11.92
AT5G12350.1	Thale cress	nucleus	24.06	11.91
AT1G76950.1	Thale cress	cytosol	24.44	11.79
AT4G14368.1	Thale cress	cytosol	24.25	11.66
AT5G19420.2	Thale cress	mitochondrion	24.62	11.5
AT1G65920.1	Thale cress	cytosol	20.86	11.03

Protein Annotations

Gene3D:2.130.10.30	MapMan:35.1	EntrezGene:822208	ProteinID:AEE77117.1	EMBL:AK230272	ProteinID:ANM64113.1
ProteinID:ANM64114.1	ArrayExpress:AT3G26100	EnsemblPlantsGene:AT3G26100	RefSeq:AT3G26100	TAIR:AT3G26100	RefSeq:AT3G26100-TAIR-G
EnsemblPlants:AT3G26100.5	Unigene:At.25510	ProteinID:BAB01075.1	GO:GO:0008150	InterPro:IPR000408	InterPro:IPR009091
RefSeq:NP_001326163.1	RefSeq:NP_001326164.1	RefSeq:NP_974362.1	PFAM:PF00415	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	UniProt:Q9LU80	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens
SUPFAM:SSF50985	UniParc:UPI00000A4127	SEG:seg	:	:	:

Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]

Coordinates

chr3:+:9536865..9540453

Molecular Weight (calculated)

57388.9 Da

IEP (calculated)

6.449

GRAVY (calculated)

-0.236

Length

532 amino acids

Sequence
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.