Factsheet for Bra036349.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40988	Canola	cytosol, plastid	99.09	99.09
Bra017335.1-P	Field mustard	cytosol	87.8	90.77
Bra025182.1-P	Field mustard	cytosol	86.16	89.41
AT3G26100.5	Thale cress	cytosol, plastid	83.42	86.09
KRG97505	Soybean	cytosol	76.68	78.69
VIT_01s0137g00230.t01	Wine grape	cytosol	76.14	78.28
KRH31377	Soybean	cytosol	75.05	77.59
PGSC0003DMT400027900	Potato	cytosol	73.59	75.8
Solyc05g014030.2.1	Tomato	cytosol	73.59	75.8
Os12t0284000-01	Rice	cytosol	73.04	75.09
GSMUA_AchrUn_...	Banana	cytosol, plastid	72.86	74.49
HORVU5Hr1G034530.6	Barley	cytosol	72.13	74.16
KRH59226	Soybean	cytosol	69.95	71.91
GSMUA_Achr9P02110_001	Banana	plastid	70.31	71.75
PGSC0003DMT400016865	Potato	cytosol, extracellular, plastid	21.68	68.79
TraesCS5D01G123500.1	Wheat	mitochondrion, plastid	26.78	65.92
Bra004253.1-P	Field mustard	plastid	59.74	63.32
Bra004074.1-P	Field mustard	cytosol, plastid	59.2	62.62
Bra027244.1-P	Field mustard	cytosol	23.32	26.12
Bra008654.1-P	Field mustard	cytosol	18.58	25.69
Bra021435.1-P	Field mustard	cytosol	17.85	25.0
Bra024242.1-P	Field mustard	cytosol	17.85	23.84
Bra037755.1-P	Field mustard	cytosol	17.85	23.56
Bra029198.1-P	Field mustard	cytosol	17.3	23.06
Bra016304.1-P	Field mustard	cytosol	14.57	21.68
Bra024664.1-P	Field mustard	cytosol	13.3	20.33
Bra039169.1-P	Field mustard	cytosol	16.94	19.75
Bra028647.1-P	Field mustard	mitochondrion	15.3	19.22
Bra013002.1-P	Field mustard	mitochondrion	15.12	18.74
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	23.32	15.57
Bra019511.1-P	Field mustard	cytosol	21.68	12.43
Bra016214.1-P	Field mustard	cytosol	22.95	12.0
Bra008895.1-P	Field mustard	nucleus	22.04	11.37
Bra015708.1-P	Field mustard	cytosol	22.22	11.36
Bra006504.1-P	Field mustard	cytosol	22.77	11.33
Bra023740.1-P	Field mustard	cytosol	21.86	11.26
Bra003698.1-P	Field mustard	mitochondrion	21.86	11.14
Bra023374.1-P	Field mustard	nucleus	22.04	10.88
Bra002235.1-P	Field mustard	nucleus	21.49	10.59
Bra038181.1-P	Field mustard	cytosol	19.31	10.58
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	21.86	10.36
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	20.95	9.06

Protein Annotations

EnsemblPlants:Bra036349.1	EnsemblPlants:Bra036349.1-P	EnsemblPlantsGene:Bra036349	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	PFAM:PF00415	PFscan:PS50012
PRINTS:PR00633	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI0002545B87	UniProt:M4F5J3
MapMan:35.1	:	:	:	:	:

Description

AT3G26100 (E=1e-252) | regulator of chromosome condensation (RCC1) family protein

Coordinates

chrA02:-:22807050..22809341

Molecular Weight (calculated)

58997.0 Da

IEP (calculated)

7.188

GRAVY (calculated)

-0.189

Length

549 amino acids

Sequence
(BLAST)

001: MDATTSGTQS LHCHNLPDQP VSSAAASPPV TPFQRQKRQY FGDSTPGEFP LAANPSIVLH VLTECRLDPR DLANLEATCS FFSQPANFAP DCSLSLPELA
101: ALDMCNKRMI FKPMSEQERE EMKRRCGGSW KLVLRFLLAG EACCRREKSQ AIAGPGHSIA VTSKGQVYTF GHNNSGQLGH GHTDEEARIL PIRSLQGTRI
201: IQAAAGAGRT MLISDNGSVY ACGKDLFGEA EYGGQGGSRQ VTTPQLVTSL KNIFVVQAAI GNFFTAVLSR EGKVYTFSWG SDGRLGHQTE ANDVEPRPLL
301: GSLENVPVVQ IAAGYCYLLA LVCQPNGMSV YSVGCGLGGK LGHGLKTDEK YPRVIEQFQL LNFQPRVVAA GAWHAAVVGQ DGRVCTWGWG RYGCLGHGNE
401: EGESVPKVVE GLSHVKAVHV ATGDYTTFVV SEDGDVYSFG CGESASLGHH TAVFEQRDRQ ANVLSPAVVT SLKQVKERVV QISLTNSIYW NAHTFALTES
501: GKLFAFGAGD KGQLGAELGR DQTESLTLGK RKEIAFFNLV GSLYKGGGT

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.