Factsheet for Bra039169.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57523	Canola	cytosol	99.79	99.79
AT3G02300.2	Thale cress	cytosol	94.69	92.53
PGSC0003DMT400003726	Potato	cytosol	76.86	77.68
VIT_14s0083g01020.t01	Wine grape	cytosol	77.92	76.78
Solyc02g089220.2.1	Tomato	mitochondrion	52.65	75.15
KRH45102	Soybean	cytosol, nucleus, peroxisome	73.89	73.42
KRH01383	Soybean	cytosol	73.46	73.0
GSMUA_Achr10P...	Banana	cytosol	72.4	70.6
TraesCS5B01G170800.1	Wheat	cytosol	71.76	70.42
HORVU5Hr1G053180.5	Barley	cytosol	71.76	70.42
TraesCS5D01G177900.1	Wheat	cytosol	71.76	70.42
Zm00001d033172_P001	Maize	cytosol	71.34	70.0
TraesCS5A01G173400.1	Wheat	cytosol	71.13	69.94
OQU91404	Sorghum	cytosol	71.13	69.21
Os03t0599600-01	Rice	mitochondrion	24.63	61.05
Bra008654.1-P	Field mustard	cytosol	20.17	23.93
Bra037755.1-P	Field mustard	cytosol	20.81	23.56
Bra029198.1-P	Field mustard	cytosol	20.59	23.54
Bra024242.1-P	Field mustard	cytosol	20.38	23.36
Bra016304.1-P	Field mustard	cytosol	18.26	23.31
Bra021435.1-P	Field mustard	cytosol	19.32	23.21
Bra024664.1-P	Field mustard	cytosol	16.99	22.28
Bra028647.1-P	Field mustard	mitochondrion	19.75	21.28
Bra013002.1-P	Field mustard	mitochondrion	18.47	19.64
Bra004253.1-P	Field mustard	plastid	21.44	19.5
Bra004074.1-P	Field mustard	cytosol, plastid	20.81	18.88
Bra027244.1-P	Field mustard	cytosol	19.32	18.57
Bra025182.1-P	Field mustard	cytosol	20.17	17.96
Bra017335.1-P	Field mustard	cytosol	20.17	17.89
Bra036349.1-P	Field mustard	cytosol, plastid	19.75	16.94
Bra019511.1-P	Field mustard	cytosol	25.27	12.43
Bra016214.1-P	Field mustard	cytosol	27.39	12.29
Bra038181.1-P	Field mustard	cytosol	26.11	12.28
Bra008895.1-P	Field mustard	nucleus	27.39	12.12
Bra015708.1-P	Field mustard	cytosol	27.18	11.92
Bra003698.1-P	Field mustard	mitochondrion	26.75	11.7
Bra006504.1-P	Field mustard	cytosol	27.18	11.6
Bra002235.1-P	Field mustard	nucleus	27.18	11.49
Bra023740.1-P	Field mustard	cytosol	25.69	11.35
Bra023374.1-P	Field mustard	nucleus	26.75	11.33
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	19.32	11.07
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	26.54	10.79
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	25.05	9.29

Protein Annotations

EnsemblPlants:Bra039169.1	EnsemblPlants:Bra039169.1-P	EnsemblPlantsGene:Bra039169	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF321	PFAM:PF00415	PFscan:PS50012
PRINTS:PR00633	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI0002547649	UniProt:M4FDJ8
MapMan:35.1	:	:	:	:	:

Description

AT3G02300 (E=1e-251) | regulator of chromosome condensation (RCC1) family protein

Coordinates

chrA05:-:23646737..23648969

Molecular Weight (calculated)

50460.7 Da

IEP (calculated)

5.465

GRAVY (calculated)

-0.148

Length

471 amino acids

Sequence
(BLAST)

001: MDIGEIIGEV AAPVSIPTKS AIYVWGYNQS GQTGRKGQES LLRIPKQLPP ELFGCPAGAN SRWLDISCGR EHTAAVASDG SLFTWGANEY GQLGDGTEVG
101: RKHPKKVKQL QSEFVKFVSC GAFCTAAIAE PRDNDGTLSK SRLWVWGQNQ GSNLPRLFSG AFPANTAIRQ VSCGTAHVVA LSEDGLLQAW GYNEQGQLGR
201: GVTCEGLQAP RVITAYAKFL DEAPELVKIT QVSCGEYHTA AVSETGEVYT WGLGSMGQLG HVSLQSGDKE LIPRRVAGLD GVSMKEVACG GVHTCGLSLE
301: GALYAWGGGQ AGQLGLGPQS GFLFSVSSGS EMLLRNVPVL VIPTDVRLVA CGHSHTLVYM REGRICGWGY NSYGQAANEK SSYAWYPSPV DWCVGQVRKL
401: AAGGGHSAVL TDAFSLKELC EFQLADSVNL SNASEIQDVA FRMGSEALAR LCERLREQFL DKDYPDGEEV Y

Best Arabidopsis Sequence Match ( AT3G02300.2 )
(BLAST)

001: MFSSLKGEFL KMDIGEIIGE VAPSVSIPTK SAIYVWGYNQ SGQTGRNEQE KLLRIPKQLP PELFGCPAGA NSRWLDISCG REHTAAVASD GSLFAWGANE
101: YGQLGDGTEV GRKHPKKVKQ LQSEFVKFVS CGAFCTAAIA EPRENDGTLS TSRLWVWGQN QGSNLPRLFS GAFPATTAIR QVSCGTAHVV ALSEEGLLQA
201: WGYNEQGQLG RGVTCEGLQA PRVINAYAKF LDEAPELVKI MQLSCGEYHT AALSDAGEVY TWGLGSMGQL GHVSLQSGDK ELIPRRVVGL DGVSMKEVAC
301: GGVHTCALSL EGALYAWGGG QAGQLGLGPQ SGFFFSVSNG SEMLLRNVPV LVIPTDVRLV ACGHSHTLVY MREGRICGWG YNSYGQAANE KSSYAWYPSP
401: VDWCVGQVRK LAAGGGHSAV LTDAFSLKEL CEFQLADSVN LSNASEIQDV AFRMGSEALA RLCERLREQL LDGDFTNGEE VY

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR23]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.