Factsheet for VIT_14s0083g01020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089220.2.1	Tomato	mitochondrion	56.9	82.42
PGSC0003DMT400003726	Potato	cytosol	80.33	82.4
KRH45102	Soybean	cytosol, nucleus, peroxisome	77.62	78.27
CDY57523	Canola	cytosol	76.99	78.13
Bra039169.1-P	Field mustard	cytosol	76.78	77.92
KRH01383	Soybean	cytosol	77.2	77.85
CDY43240	Canola	cytosol	76.78	77.75
AT3G02300.2	Thale cress	cytosol	77.2	76.56
HORVU5Hr1G053180.5	Barley	cytosol	75.52	75.21
TraesCS5D01G177900.1	Wheat	cytosol	75.52	75.21
TraesCS5B01G170800.1	Wheat	cytosol	75.52	75.21
TraesCS5A01G173400.1	Wheat	cytosol	74.9	74.74
Zm00001d033172_P001	Maize	cytosol	74.9	74.58
GSMUA_Achr10P...	Banana	cytosol	74.48	73.71
OQU91404	Sorghum	cytosol	74.48	73.55
Os03t0599600-01	Rice	mitochondrion	26.36	66.32
VIT_14s0006g03240.t01	Wine grape	cytosol	20.08	24.3
VIT_07s0031g02560.t01	Wine grape	cytosol	22.38	24.04
VIT_01s0026g01520.t01	Wine grape	cytosol	19.25	23.23
VIT_07s0031g02850.t01	Wine grape	mitochondrion	20.08	22.86
VIT_12s0057g00540.t01	Wine grape	cytosol, mitochondrion	8.58	22.04
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	12.55	18.24
VIT_01s0137g00230.t01	Wine grape	cytosol	20.29	18.16
VIT_19s0014g03080.t01	Wine grape	cytosol	17.57	17.07
VIT_17s0000g05980.t01	Wine grape	endoplasmic reticulum	20.92	14.47
VIT_01s0026g02170.t01	Wine grape	cytosol	24.27	12.78
VIT_06s0009g03550.t01	Wine grape	nucleus	26.15	11.29
VIT_05s0049g01140.t01	Wine grape	cytosol	24.48	11.03
VIT_13s0067g03380.t01	Wine grape	endoplasmic reticulum, extracellular	25.31	11.02
VIT_04s0079g00290.t01	Wine grape	cytosol	22.8	10.85
VIT_18s0166g00210.t01	Wine grape	cytosol	24.9	10.54

Protein Annotations

EntrezGene:100254890	wikigene:100254890	Gene3D:2.130.10.30	MapMan:35.1	EMBL:AM458395	ProteinID:CAN65617
ProteinID:CAN65617.1	ProteinID:CBI16933	ProteinID:CBI16933.3	UniProt:D7SMN5	EMBL:FN594955	InterPro:IPR000408
InterPro:IPR009091	EntrezGene:LOC100254890	wikigene:LOC100254890	PFAM:PF00415	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF321	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SUPFAM:SSF50985
UniParc:UPI0001984B0B	ArrayExpress:VIT_14s0083g01020	EnsemblPlantsGene:VIT_14s0083g01020	EnsemblPlants:VIT_14s0083g01020.t01	unigene:Vvi.20104	RefSeq:XP_002281545
RefSeq:XP_002281545.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr14:+:23306141..23319918

Molecular Weight (calculated)

51583.7 Da

IEP (calculated)

6.050

GRAVY (calculated)

-0.290

Length

478 amino acids

Sequence
(BLAST)

001: MDIGDIFGES RPVNIPTKSA IYVWGYNQRG QTGRNGKELQ LRIPKQLPPE LFGCPAGANS RWLSIACGRE HTAAVASDGS LFTWGANDFG QLGDGTEDGR
101: KHPKKVKQLQ TEFVKSISCG AHCTAAIAEP REKNGIVSTS RLWVWGQNQG SNYPHLFWGA FTPNTIIRQV SCGAVHTVAL SEEGLVQAWG YNEYGQLGRG
201: ITCEGLQGAR VINAYSKFFN EAPELVKITQ VSCGEYHTAA ISENGEVYTW GLGNMGQLGH CSLQYGDKEL VPRRVVALDG ISTKDIACGG VHTCALTSKG
301: ALYAWGGGQA GQLGLGPQSG LFSCNLNESD MLLRNIPVLV VPTGVQLIAC GHSHTLISMK DGRICGWGYN SYGQAANEKS TYAWYPSPID WCVGEVRQLA
401: AGGGHSAVLT DACSLKELCE FRLADCVTPS NASEIEDVAS RTGSDALARL CERLREHLPH DDDDDYNYDD VEIGNGKK

Best Arabidopsis Sequence Match ( AT3G02300.2 )
(BLAST)

001: MFSSLKGEFL KMDIGEIIGE VAPSVSIPTK SAIYVWGYNQ SGQTGRNEQE KLLRIPKQLP PELFGCPAGA NSRWLDISCG REHTAAVASD GSLFAWGANE
101: YGQLGDGTEV GRKHPKKVKQ LQSEFVKFVS CGAFCTAAIA EPRENDGTLS TSRLWVWGQN QGSNLPRLFS GAFPATTAIR QVSCGTAHVV ALSEEGLLQA
201: WGYNEQGQLG RGVTCEGLQA PRVINAYAKF LDEAPELVKI MQLSCGEYHT AALSDAGEVY TWGLGSMGQL GHVSLQSGDK ELIPRRVVGL DGVSMKEVAC
301: GGVHTCALSL EGALYAWGGG QAGQLGLGPQ SGFFFSVSNG SEMLLRNVPV LVIPTDVRLV ACGHSHTLVY MREGRICGWG YNSYGQAANE KSSYAWYPSP
401: VDWCVGQVRK LAAGGGHSAV LTDAFSLKEL CEFQLADSVN LSNASEIQDV AFRMGSEALA RLCERLREQL LDGDFTNGEE VY

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR23]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.