Factsheet for GSMUA_Achr10P08180_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033172_P001	Maize	cytosol	78.26	78.75
OQU91404	Sorghum	cytosol	78.26	78.1
Solyc02g089220.2.1	Tomato	mitochondrion	53.21	77.88
TraesCS5D01G177900.1	Wheat	cytosol	77.23	77.71
TraesCS5B01G170800.1	Wheat	cytosol	76.81	77.29
HORVU5Hr1G053180.5	Barley	cytosol	76.81	77.29
TraesCS5A01G173400.1	Wheat	cytosol	76.19	76.83
PGSC0003DMT400003726	Potato	cytosol	73.71	76.39
VIT_14s0083g01020.t01	Wine grape	cytosol	73.71	74.48
KRH45102	Soybean	cytosol, nucleus, peroxisome	72.26	73.63
KRH01383	Soybean	cytosol	71.43	72.78
CDY57523	Canola	cytosol	70.81	72.61
Bra039169.1-P	Field mustard	cytosol	70.6	72.4
CDY43240	Canola	cytosol	70.6	72.25
AT3G02300.2	Thale cress	cytosol	70.6	70.75
Os03t0599600-01	Rice	mitochondrion	27.54	70.0
GSMUA_Achr10P...	Banana	mitochondrion	21.95	25.24
GSMUA_Achr9P15560_001	Banana	cytosol	18.63	24.19
GSMUA_Achr6P17690_001	Banana	cytosol	21.95	24.15
GSMUA_Achr3P19000_001	Banana	nucleus	21.95	23.61
GSMUA_Achr6P29750_001	Banana	cytosol	18.63	22.67
GSMUA_Achr8P06920_001	Banana	cytosol	13.66	20.18
GSMUA_AchrUn_...	Banana	cytosol, plastid	20.7	18.62
GSMUA_Achr5P12060_001	Banana	mitochondrion	17.39	18.58
GSMUA_Achr9P02110_001	Banana	plastid	19.88	17.84
GSMUA_AchrUn_...	Banana	cytosol	19.46	17.64
GSMUA_Achr1P00100_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.6	17.28
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	16.98	16.67
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	25.47	13.16
GSMUA_Achr8P07850_001	Banana	cytosol	27.33	11.95
GSMUA_Achr5P08220_001	Banana	cytosol	26.92	11.82
GSMUA_Achr4P00510_001	Banana	cytosol	23.4	11.76
GSMUA_Achr1P02140_001	Banana	cytosol	21.74	11.76
GSMUA_Achr5P11650_001	Banana	cytosol	22.57	11.24
GSMUA_AchrUn_...	Banana	nucleus	26.71	11.19
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	22.15	10.84
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	21.33	10.52
GSMUA_Achr7P20980_001	Banana	cytosol	23.81	7.91

Protein Annotations

EnsemblPlants:GSMUA_Achr10P08180_001	EnsemblPlants:GSMUA_Achr10T08180_001	EnsemblPlantsGene:GSMUA_Achr10G08180_001	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF321	PFAM:PF00415	PFscan:PS50012
PRINTS:PR00633	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI000296BF95	UniProt:M0RGE4
MapMan:35.1	:	:	:	:	:

Description

Putative Probable E3 ubiquitin-protein ligase HERC4 [Source:GMGC_GENE;Acc:GSMUA_Achr10G08180_001]

Coordinates

chr10:-:18207521..18215379

Molecular Weight (calculated)

52513.0 Da

IEP (calculated)

7.497

GRAVY (calculated)

-0.261

Length

483 amino acids

Sequence
(BLAST)

001: MDIDGILSDV RVVNLPTKSA IYIWGYNHSG QTARKGKDCH LRIPKSLSHK LFKCAGGDNL RWLDIACGRE HTAAVASDGS LFTWGANDFG QLGDGTEESR
101: KHPKKVKSLQ TEYVKSVSCG AHCTAAVAEP RENDGTISTS RLWVWGQNQG SNHPRLYWGA FNPNTVISQV SCGSVHVVAL SEDGLLQAWG YNEYGQLGRG
201: FTSEGLQGAR ILNAYARFLD EPPELVKIRQ VACGEYHTAA ISEDGDVYTW GLGSMGQLGH CSPQSGDKEL LPRRVVALDG ITVKDVACGG VHTCALTAQG
301: ALYTWGGGQA GQLGLGPQNG FFSCVPNASD MLLRNLPVLV IPKGVQLVTC GHSHTLISMR DGRIYGWGYN SYGQAANEKS TYAWFPSPVD WCVGEVKRLA
401: AGGGHSAVLT DAHTLKELCE FRLAESINLS NCFTIADVAS RTGADSLARL CERYRYGQTY ALKEKKDWYI HSTHGCSFHK FLE

Best Arabidopsis Sequence Match ( AT3G02300.2 )
(BLAST)

001: MFSSLKGEFL KMDIGEIIGE VAPSVSIPTK SAIYVWGYNQ SGQTGRNEQE KLLRIPKQLP PELFGCPAGA NSRWLDISCG REHTAAVASD GSLFAWGANE
101: YGQLGDGTEV GRKHPKKVKQ LQSEFVKFVS CGAFCTAAIA EPRENDGTLS TSRLWVWGQN QGSNLPRLFS GAFPATTAIR QVSCGTAHVV ALSEEGLLQA
201: WGYNEQGQLG RGVTCEGLQA PRVINAYAKF LDEAPELVKI MQLSCGEYHT AALSDAGEVY TWGLGSMGQL GHVSLQSGDK ELIPRRVVGL DGVSMKEVAC
301: GGVHTCALSL EGALYAWGGG QAGQLGLGPQ SGFFFSVSNG SEMLLRNVPV LVIPTDVRLV ACGHSHTLVY MREGRICGWG YNSYGQAANE KSSYAWYPSP
401: VDWCVGQVRK LAAGGGHSAV LTDAFSLKEL CEFQLADSVN LSNASEIQDV AFRMGSEALA RLCERLREQL LDGDFTNGEE VY

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR23]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.