Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU91404 | Sorghum | cytosol | 97.71 | 96.9 |
| HORVU5Hr1G053180.5 | Barley | cytosol | 86.04 | 86.04 |
| TraesCS5D01G177900.1 | Wheat | cytosol | 85.62 | 85.62 |
| TraesCS5B01G170800.1 | Wheat | cytosol | 85.62 | 85.62 |
| TraesCS5A01G173400.1 | Wheat | cytosol | 85.21 | 85.39 |
| Solyc02g089220.2.1 | Tomato | mitochondrion | 54.58 | 79.39 |
| GSMUA_Achr10P... | Banana | cytosol | 78.75 | 78.26 |
| PGSC0003DMT400003726 | Potato | cytosol | 74.17 | 76.39 |
| Os03t0599600-01 | Rice | mitochondrion | 29.79 | 75.26 |
| VIT_14s0083g01020.t01 | Wine grape | cytosol | 74.58 | 74.9 |
| KRH01383 | Soybean | cytosol | 70.83 | 71.73 |
| CDY57523 | Canola | cytosol | 70.21 | 71.55 |
| KRH45102 | Soybean | cytosol, nucleus, peroxisome | 70.62 | 71.52 |
| Bra039169.1-P | Field mustard | cytosol | 70.0 | 71.34 |
| CDY43240 | Canola | cytosol | 70.0 | 71.19 |
| AT3G02300.2 | Thale cress | cytosol | 69.79 | 69.5 |
| Zm00001d003632_P003 | Maize | extracellular | 22.5 | 24.38 |
| Zm00001d050380_P004 | Maize | cytosol | 18.33 | 22.62 |
| Zm00001d052624_P007 | Maize | plastid | 20.21 | 21.18 |
| Zm00001d043280_P001 | Maize | cytosol | 17.92 | 21.08 |
| Zm00001d032229_P002 | Maize | mitochondrion | 17.92 | 20.53 |
| Zm00001d019595_P001 | Maize | cytosol | 19.58 | 19.46 |
| Zm00001d021372_P001 | Maize | mitochondrion | 17.5 | 19.44 |
| Zm00001d005395_P001 | Maize | cytosol | 18.96 | 18.84 |
| Zm00001d050985_P002 | Maize | cytosol | 18.75 | 16.19 |
| Zm00001d035723_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 26.88 | 14.07 |
| Zm00001d011805_P001 | Maize | cytosol | 25.21 | 13.27 |
| Zm00001d017641_P004 | Maize | cytosol | 23.33 | 13.01 |
| Zm00001d042074_P001 | Maize | cytosol | 26.67 | 11.73 |
| Zm00001d011851_P001 | Maize | cytosol | 26.67 | 11.45 |
| Zm00001d002876_P001 | Maize | mitochondrion | 25.83 | 11.41 |
| Zm00001d038882_P002 | Maize | cytosol | 25.0 | 11.37 |
| Zm00001d051479_P005 | Maize | nucleus | 25.21 | 11.25 |
| Zm00001d011660_P003 | Maize | cytosol | 24.58 | 11.16 |
| Zm00001d002544_P004 | Maize | cytosol, endoplasmic reticulum, nucleus | 23.54 | 10.18 |
| Zm00001d006773_P001 | Maize | cytosol | 7.5 | 8.93 |
Protein Annotations
| EntrezGene:100304276 | Gene3D:2.130.10.30 | MapMan:35.1 | EMBL:BT060664 | UniProt:C0HEA8 | InterPro:IPR000408 |
| InterPro:IPR009091 | ProteinID:ONM06910.1 | ProteinID:ONM06914.1 | PFAM:PF00415 | PRINTS:PR00633 | ScanProsite:PS00626 |
| PFscan:PS50012 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF321 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | SUPFAM:SSF50985 |
| UniParc:UPI00019489F5 | EnsemblPlantsGene:Zm00001d033172 | EnsemblPlants:Zm00001d033172_P001 | EnsemblPlants:Zm00001d033172_T001 | SEG:seg | : |
Description
Regulator of chromosome condensation (RCC1) family protein
Coordinates
chr1:+:252788507..252796155
Molecular Weight (calculated)
51480.8 Da
IEP (calculated)
6.318
GRAVY (calculated)
-0.206
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVDDVLSNL RVVGVPTKSA IYIWGYNHSG QTARKGKECH LRIPKSLPPK LFKLGNGKSL RWTDIACGRE HTAAVASDGS LFTWGANEFG QLGDGTEDSA
101: KEPKKVKSLE TEFVKSVSCG AHCTAAVAEP RENDGTVSKS RLWVWGQNQG SDYPRLFWGA FTPNTVIKQV SCGAVHVMAL SEDGLLQAWG YNEYGQLGRG
201: RTSQGLQGAR VLNAYARFLD DAPEQVKIVR VSCGEYHTAA ISENGEVYTW GLGSMGQLGH CSLQSGDNEL IPRRVVALDG IVVGDVSCGG VHSCAVTEGG
301: ALYAWGGGHV GQLGVGPQGG FFSCSLNGSD MLLRNIPVLV IPSGVRLATC GHSHTLVSMK DGRIYGWGYN SYGQATNEKS TYAWFPSPVD WCVGEVRRLA
401: AGGGHSAVLT DACSLKELCE FKLAETVNLS NAQLIEDVAS RTGADALARL CEKVREHLDK EGECEFLEKQ VAEEVNTIGS
101: KEPKKVKSLE TEFVKSVSCG AHCTAAVAEP RENDGTVSKS RLWVWGQNQG SDYPRLFWGA FTPNTVIKQV SCGAVHVMAL SEDGLLQAWG YNEYGQLGRG
201: RTSQGLQGAR VLNAYARFLD DAPEQVKIVR VSCGEYHTAA ISENGEVYTW GLGSMGQLGH CSLQSGDNEL IPRRVVALDG IVVGDVSCGG VHSCAVTEGG
301: ALYAWGGGHV GQLGVGPQGG FFSCSLNGSD MLLRNIPVLV IPSGVRLATC GHSHTLVSMK DGRIYGWGYN SYGQATNEKS TYAWFPSPVD WCVGEVRRLA
401: AGGGHSAVLT DACSLKELCE FKLAETVNLS NAQLIEDVAS RTGADALARL CEKVREHLDK EGECEFLEKQ VAEEVNTIGS
001: MFSSLKGEFL KMDIGEIIGE VAPSVSIPTK SAIYVWGYNQ SGQTGRNEQE KLLRIPKQLP PELFGCPAGA NSRWLDISCG REHTAAVASD GSLFAWGANE
101: YGQLGDGTEV GRKHPKKVKQ LQSEFVKFVS CGAFCTAAIA EPRENDGTLS TSRLWVWGQN QGSNLPRLFS GAFPATTAIR QVSCGTAHVV ALSEEGLLQA
201: WGYNEQGQLG RGVTCEGLQA PRVINAYAKF LDEAPELVKI MQLSCGEYHT AALSDAGEVY TWGLGSMGQL GHVSLQSGDK ELIPRRVVGL DGVSMKEVAC
301: GGVHTCALSL EGALYAWGGG QAGQLGLGPQ SGFFFSVSNG SEMLLRNVPV LVIPTDVRLV ACGHSHTLVY MREGRICGWG YNSYGQAANE KSSYAWYPSP
401: VDWCVGQVRK LAAGGGHSAV LTDAFSLKEL CEFQLADSVN LSNASEIQDV AFRMGSEALA RLCERLREQL LDGDFTNGEE VY
101: YGQLGDGTEV GRKHPKKVKQ LQSEFVKFVS CGAFCTAAIA EPRENDGTLS TSRLWVWGQN QGSNLPRLFS GAFPATTAIR QVSCGTAHVV ALSEEGLLQA
201: WGYNEQGQLG RGVTCEGLQA PRVINAYAKF LDEAPELVKI MQLSCGEYHT AALSDAGEVY TWGLGSMGQL GHVSLQSGDK ELIPRRVVGL DGVSMKEVAC
301: GGVHTCALSL EGALYAWGGG QAGQLGLGPQ SGFFFSVSNG SEMLLRNVPV LVIPTDVRLV ACGHSHTLVY MREGRICGWG YNSYGQAANE KSSYAWYPSP
401: VDWCVGQVRK LAAGGGHSAV LTDAFSLKEL CEFQLADSVN LSNASEIQDV AFRMGSEALA RLCERLREQL LDGDFTNGEE VY
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR23]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.