Factsheet for Solyc02g089220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003726	Potato	cytosol	98.18	69.53
VIT_14s0083g01020.t01	Wine grape	cytosol	82.42	56.9
HORVU5Hr1G053180.5	Barley	cytosol	79.7	54.79
TraesCS5D01G177900.1	Wheat	cytosol	79.7	54.79
Zm00001d033172_P001	Maize	cytosol	79.39	54.58
TraesCS5B01G170800.1	Wheat	cytosol	79.39	54.58
KRH01383	Soybean	cytosol	78.18	54.43
KRH45102	Soybean	cytosol, nucleus, peroxisome	78.18	54.43
TraesCS5A01G173400.1	Wheat	cytosol	78.79	54.28
OQU91404	Sorghum	cytosol	79.09	53.93
GSMUA_Achr10P...	Banana	cytosol	77.88	53.21
CDY57523	Canola	cytosol	75.45	52.87
CDY43240	Canola	cytosol	75.45	52.75
Bra039169.1-P	Field mustard	cytosol	75.15	52.65
AT3G02300.2	Thale cress	cytosol	76.06	52.07
Os03t0599600-01	Rice	mitochondrion	16.36	28.42
Solyc05g018620.2.1	Tomato	cytosol	22.42	24.1
Solyc05g056590.2.1	Tomato	cytosol	19.39	23.27
Solyc07g042980.2.1	Tomato	cytosol	14.55	19.75
Solyc02g085780.2.1	Tomato	cytosol	18.18	15.38
Solyc05g006940.2.1	Tomato	cytosol	17.27	14.47
Solyc05g014030.2.1	Tomato	cytosol	18.79	11.63
Solyc07g063300.2.1	Tomato	plasma membrane	16.97	11.52
Solyc02g036390.1.1	Tomato	cytosol	20.91	8.79
Solyc03g116360.1.1	Tomato	cytosol	23.94	8.35
Solyc12g099740.1.1	Tomato	nucleus	24.85	8.0
Solyc05g007290.1.1	Tomato	endoplasmic reticulum	23.64	7.73
Solyc11g065120.1.1	Tomato	cytosol	25.45	7.44
Solyc03g005590.1.1	Tomato	cytosol, plastid	23.03	7.1
Solyc04g071040.2.1	Tomato	cytosol	23.94	7.02
Solyc05g007280.2.1	Tomato	cytosol	1.21	6.78
Solyc07g042970.2.1	Tomato	mitochondrion	3.94	5.39
Solyc02g081250.1.1	Tomato	cytosol	24.24	3.83

Protein Annotations

EnsemblPlants:Solyc02g089220.2.1	EnsemblPlantsGene:Solyc02g089220.2	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:LY6_UPA_recep-like
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF321	PFAM:PF00021	PFAM:PF00415
PFscan:PS50012	PRINTS:PR00633	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI0002768A81
UniProt:K4BC74	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2:-:51093850..51098418

Molecular Weight (calculated)

35323.9 Da

IEP (calculated)

6.226

GRAVY (calculated)

-0.058

Length

330 amino acids

Sequence
(BLAST)

001: MSARRLWVWG QNQGSNYPRL FWGAFSPSTV IRQVSCGAVH VVALSEEGLL QAWGYNEYGQ LGRGVTSEGL QGPCVINGYA RFLDEAPELV KITQVSCGEY
101: HTAAISEKGE VYTWGLGSVG QLGHCSLQSG DKELLPRRVV SLDGICIKEV ACGGVHTCAV TAKGALYAWG GGQAGQLGVG PLNGFFSCKL NESEMMLRNI
201: PVLVVPDGVQ LVACGHSHTL TSAKDGRIHG WGYNCYGQAA NEKSTYAWCP SPVDWCVGAV RKLAAGGGHS AVLTDACSLK ELCEFRLAET VNPSNASVVE
301: DVASRTGADA LARLCERLRE HYYNDDEFGL

Best Arabidopsis Sequence Match ( AT3G02300.2 )
(BLAST)

001: MFSSLKGEFL KMDIGEIIGE VAPSVSIPTK SAIYVWGYNQ SGQTGRNEQE KLLRIPKQLP PELFGCPAGA NSRWLDISCG REHTAAVASD GSLFAWGANE
101: YGQLGDGTEV GRKHPKKVKQ LQSEFVKFVS CGAFCTAAIA EPRENDGTLS TSRLWVWGQN QGSNLPRLFS GAFPATTAIR QVSCGTAHVV ALSEEGLLQA
201: WGYNEQGQLG RGVTCEGLQA PRVINAYAKF LDEAPELVKI MQLSCGEYHT AALSDAGEVY TWGLGSMGQL GHVSLQSGDK ELIPRRVVGL DGVSMKEVAC
301: GGVHTCALSL EGALYAWGGG QAGQLGLGPQ SGFFFSVSNG SEMLLRNVPV LVIPTDVRLV ACGHSHTLVY MREGRICGWG YNSYGQAANE KSSYAWYPSP
401: VDWCVGQVRK LAAGGGHSAV LTDAFSLKEL CEFQLADSVN LSNASEIQDV AFRMGSEALA RLCERLREQL LDGDFTNGEE VY

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR23]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.