CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01383	Soybean	cytosol	96.41	96.41
PGSC0003DMT400003726	Potato	cytosol	77.85	79.18
Solyc02g089220.2.1	Tomato	mitochondrion	54.43	78.18
VIT_14s0083g01020.t01	Wine grape	cytosol	78.27	77.62
CDY43240	Canola	cytosol	73.84	74.15
CDY57523	Canola	cytosol	73.63	74.1
Bra039169.1-P	Field mustard	cytosol	73.42	73.89
AT3G02300.2	Thale cress	cytosol	74.05	72.82
TraesCS5D01G177900.1	Wheat	cytosol	73.63	72.71
HORVU5Hr1G053180.5	Barley	cytosol	73.42	72.5
TraesCS5B01G170800.1	Wheat	cytosol	73.21	72.29
GSMUA_Achr10P...	Banana	cytosol	73.63	72.26
TraesCS5A01G173400.1	Wheat	cytosol	72.36	71.61
Zm00001d033172_P001	Maize	cytosol	71.52	70.62
OQU91404	Sorghum	cytosol	71.73	70.25
Os03t0599600-01	Rice	mitochondrion	26.79	66.84
KRG93861	Soybean	nucleus	20.89	25.06
KRH63955	Soybean	mitochondrion	21.52	24.46
KRH59606	Soybean	cytosol	22.36	24.26
KRH40960	Soybean	cytosol	16.46	23.08
KRH53977	Soybean	cytosol, mitochondrion, nucleus	15.4	22.81
KRH63996	Soybean	nucleus	22.15	21.78
KRH53944	Soybean	plastid	21.31	21.31
KRH49501	Soybean	cytosol	7.38	20.23
KRH46563	Soybean	mitochondrion	18.14	19.37
KRG97505	Soybean	cytosol	20.46	18.13
KRH31377	Soybean	cytosol	20.25	18.08
KRH08750	Soybean	cytosol	23.63	17.58
KRH22127	Soybean	cytosol	17.93	17.53
KRH59226	Soybean	cytosol	19.41	17.23
KRH27216	Soybean	cytosol	18.14	17.03
KRH74759	Soybean	nucleus	18.78	15.81
KRH69375	Soybean	nucleus	19.41	15.57
KRH30228	Soybean	cytosol	13.08	15.23
KRH45886	Soybean	nucleus	27.22	13.55
KRG99112	Soybean	cytosol	27.0	13.06
KRH45937	Soybean	nucleus	28.27	12.08
KRG99075	Soybean	nucleus	27.85	11.93
KRH14571	Soybean	nucleus	27.64	11.83
KRH73555	Soybean	nucleus	27.64	11.82
KRG91629	Soybean	cytosol	27.22	11.75
KRH35179	Soybean	cytosol	27.43	11.61
KRH70333	Soybean	cytosol	26.79	11.34
KRH65503	Soybean	cytosol, mitochondrion, nucleus	24.68	11.19
KRH31700	Soybean	cytosol	25.32	11.13
KRG98005	Soybean	cytosol	25.11	11.12
KRH30884	Soybean	cytosol	24.68	10.89
KRH69117	Soybean	cytosol	24.47	10.76
KRH40796	Soybean	cytosol	16.88	10.67
KRH00393	Soybean	cytosol	23.84	10.57
KRH08736	Soybean	endoplasmic reticulum	14.98	10.19
KRH30227	Soybean	cytosol	4.85	5.1

Protein Annotations

EMBL:ACUP02004991	EnsemblPlants:KRH45102	EnsemblPlantsGene:GLYMA_08G250900	EntrezGene:100787126	Gene3D:2.130.10.30	InterPro:IPR000408
InterPro:IPR009091	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF321	PFAM:PF00415
PFscan:PS50012	PRINTS:PR00633	ProteinID:KRH45102	ProteinID:KRH45102.1	ScanProsite:PS00626	SEG:seg
SUPFAM:SSF50985	UniParc:UPI0002337F84	UniProt:I1KWJ0	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr8:-:21987609..21991906

Molecular Weight (calculated)

51079.7 Da

IEP (calculated)

6.625

GRAVY (calculated)

-0.177

Length

474 amino acids

Sequence
(BLAST)

001: MDIDAIFGTI RPVSVPRKSA IYVWGYNQSG QTGRKGKEDQ LRIPKQLPPE LFGCPAGTNA CWLDVACGRE HTAAIASDGS LFTWGANDFG QLGDGTEERR
101: KHPEKVKQLE SEFVKSVSCG AHCSACIAEP RENDGSISTR RLWVWGQNQG SNLPRLFWGA FKPNTIIREV SCGAVHVVAL SDEGLLQAWG YNECGQLGRG
201: VTCEGLQGAH IISSYAKFLD EAPELVKIAK VSCGEYHTAA ISDKGEVYTW GLGNMGQLGH SSLQYGDKEL LPRRVVTLDG IFIKDVACGG VHTCALTQGG
301: ALYTWGGGQS GQLGLGPQTG LFSCVANDSQ TFFRNIPVLV VPKGVQLVAC GHSHTLISMS DGRIHGWGYN NYGQAANEKC TYAWYPSPVD WCVGEVRKLA
401: AGGGHSAVLT DACSLKELCE FVLADSMTLS NAAKVEDIAY RTGSDALVRL CGRLREYMLA GGALEQKEEM NSKI

Best Arabidopsis Sequence Match ( AT3G02300.2 )
(BLAST)

001: MFSSLKGEFL KMDIGEIIGE VAPSVSIPTK SAIYVWGYNQ SGQTGRNEQE KLLRIPKQLP PELFGCPAGA NSRWLDISCG REHTAAVASD GSLFAWGANE
101: YGQLGDGTEV GRKHPKKVKQ LQSEFVKFVS CGAFCTAAIA EPRENDGTLS TSRLWVWGQN QGSNLPRLFS GAFPATTAIR QVSCGTAHVV ALSEEGLLQA
201: WGYNEQGQLG RGVTCEGLQA PRVINAYAKF LDEAPELVKI MQLSCGEYHT AALSDAGEVY TWGLGSMGQL GHVSLQSGDK ELIPRRVVGL DGVSMKEVAC
301: GGVHTCALSL EGALYAWGGG QAGQLGLGPQ SGFFFSVSNG SEMLLRNVPV LVIPTDVRLV ACGHSHTLVY MREGRICGWG YNSYGQAANE KSSYAWYPSP
401: VDWCVGQVRK LAAGGGHSAV LTDAFSLKEL CEFQLADSVN LSNASEIQDV AFRMGSEALA RLCERLREQL LDGDFTNGEE VY

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR23]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.