Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G053180.5 | Barley | cytosol | 98.33 | 98.12 |
| TraesCS5B01G170800.1 | Wheat | cytosol | 98.12 | 97.92 |
| TraesCS5D01G177900.1 | Wheat | cytosol | 97.91 | 97.71 |
| Zm00001d033172_P001 | Maize | cytosol | 85.39 | 85.21 |
| OQU91404 | Sorghum | cytosol | 85.39 | 84.5 |
| Solyc02g089220.2.1 | Tomato | mitochondrion | 54.28 | 78.79 |
| GSMUA_Achr10P... | Banana | cytosol | 76.83 | 76.19 |
| PGSC0003DMT400003726 | Potato | cytosol | 73.9 | 75.97 |
| VIT_14s0083g01020.t01 | Wine grape | cytosol | 74.74 | 74.9 |
| Os03t0599600-01 | Rice | mitochondrion | 29.02 | 73.16 |
| KRH45102 | Soybean | cytosol, nucleus, peroxisome | 71.61 | 72.36 |
| KRH01383 | Soybean | cytosol | 71.4 | 72.15 |
| CDY57523 | Canola | cytosol | 70.15 | 71.34 |
| Bra039169.1-P | Field mustard | cytosol | 69.94 | 71.13 |
| CDY43240 | Canola | cytosol | 69.94 | 70.97 |
| AT3G02300.2 | Thale cress | cytosol | 69.94 | 69.5 |
| TraesCS1A01G076400.1 | Wheat | mitochondrion | 22.34 | 25.54 |
| TraesCS2A01G306400.3 | Wheat | cytosol | 22.13 | 23.93 |
| TraesCS7A01G284800.1 | Wheat | cytosol | 19.83 | 23.81 |
| TraesCS6A01G153100.1 | Wheat | golgi | 21.71 | 22.13 |
| TraesCS3A01G319000.1 | Wheat | cytosol | 17.75 | 20.73 |
| TraesCS5A01G364400.2 | Wheat | mitochondrion | 17.95 | 19.63 |
| TraesCS2A01G236300.4 | Wheat | cytosol | 19.21 | 18.74 |
| TraesCS1A01G020400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 24.22 | 12.79 |
| TraesCS3A01G512900.1 | Wheat | cytosol | 24.22 | 12.73 |
| TraesCS6A01G261000.1 | Wheat | cytosol | 22.13 | 11.61 |
| TraesCS7A01G185400.1 | Wheat | cytosol | 24.22 | 11.46 |
| TraesCS2A01G581400.1 | Wheat | cytosol | 24.63 | 11.03 |
| TraesCS1A01G240600.2 | Wheat | cytosol | 24.63 | 10.76 |
| TraesCS2A01G456700.1 | Wheat | cytosol, nucleus, peroxisome | 23.59 | 10.74 |
| TraesCS1A01G366800.1 | Wheat | cytosol | 22.76 | 10.44 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G173400.1 | EnsemblPlantsGene:TraesCS5A01G173400 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF321 | PFAM:PF00415 | PFscan:PS50012 | PRINTS:PR00633 |
| ScanProsite:PS00626 | SEG:seg | SUPFAM:SSF50985 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr5A:-:366711731..366716948
Molecular Weight (calculated)
51724.2 Da
IEP (calculated)
6.893
GRAVY (calculated)
-0.205
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIDDVICNL RVVGVPTKSA IYTWGYNQSG QTARKGKERH LRIPKSLPPK LFTCRDGENL RWIHIACGRA HTAAVVSDGS LFTWGSNDFG QLGDGTEESA
101: KEPKKVNALA TEFVKSVSCG AHCTAAIAEP RENDGTISRS RLWVWGQNQG SDYPRLYWGA FAPNTVIRQV SCGAVHVVAL SDDGLLQAWG YNEYGQLGRG
201: CTSEGVQGAR VLNAYARFLD DTPELVKIVR VSCGEYHAAA ISENGEVYTW GLGSLGQLGH RSLQSGDKEL IPRRVVALKI VTRDVSCGGV HSCAVTEGGA
301: LYGWGGGHVG QLGLGPQNGF FSCALNGSDM LLRNIPVLVI PSGVRLVTCG HSHTLVSMKD GRIYGWGYNS YGQAANEKST YAWYPSPVDW CVGEVRRLAA
401: GGGHSAVLTD ASSLKELCEF KLAETVNRSN ARLIEDVASR TGADALARLC EKLREHLVEH GDSELVEMHM VEEIEAKAG
101: KEPKKVNALA TEFVKSVSCG AHCTAAIAEP RENDGTISRS RLWVWGQNQG SDYPRLYWGA FAPNTVIRQV SCGAVHVVAL SDDGLLQAWG YNEYGQLGRG
201: CTSEGVQGAR VLNAYARFLD DTPELVKIVR VSCGEYHAAA ISENGEVYTW GLGSLGQLGH RSLQSGDKEL IPRRVVALKI VTRDVSCGGV HSCAVTEGGA
301: LYGWGGGHVG QLGLGPQNGF FSCALNGSDM LLRNIPVLVI PSGVRLVTCG HSHTLVSMKD GRIYGWGYNS YGQAANEKST YAWYPSPVDW CVGEVRRLAA
401: GGGHSAVLTD ASSLKELCEF KLAETVNRSN ARLIEDVASR TGADALARLC EKLREHLVEH GDSELVEMHM VEEIEAKAG
001: MFSSLKGEFL KMDIGEIIGE VAPSVSIPTK SAIYVWGYNQ SGQTGRNEQE KLLRIPKQLP PELFGCPAGA NSRWLDISCG REHTAAVASD GSLFAWGANE
101: YGQLGDGTEV GRKHPKKVKQ LQSEFVKFVS CGAFCTAAIA EPRENDGTLS TSRLWVWGQN QGSNLPRLFS GAFPATTAIR QVSCGTAHVV ALSEEGLLQA
201: WGYNEQGQLG RGVTCEGLQA PRVINAYAKF LDEAPELVKI MQLSCGEYHT AALSDAGEVY TWGLGSMGQL GHVSLQSGDK ELIPRRVVGL DGVSMKEVAC
301: GGVHTCALSL EGALYAWGGG QAGQLGLGPQ SGFFFSVSNG SEMLLRNVPV LVIPTDVRLV ACGHSHTLVY MREGRICGWG YNSYGQAANE KSSYAWYPSP
401: VDWCVGQVRK LAAGGGHSAV LTDAFSLKEL CEFQLADSVN LSNASEIQDV AFRMGSEALA RLCERLREQL LDGDFTNGEE VY
101: YGQLGDGTEV GRKHPKKVKQ LQSEFVKFVS CGAFCTAAIA EPRENDGTLS TSRLWVWGQN QGSNLPRLFS GAFPATTAIR QVSCGTAHVV ALSEEGLLQA
201: WGYNEQGQLG RGVTCEGLQA PRVINAYAKF LDEAPELVKI MQLSCGEYHT AALSDAGEVY TWGLGSMGQL GHVSLQSGDK ELIPRRVVGL DGVSMKEVAC
301: GGVHTCALSL EGALYAWGGG QAGQLGLGPQ SGFFFSVSNG SEMLLRNVPV LVIPTDVRLV ACGHSHTLVY MREGRICGWG YNSYGQAANE KSSYAWYPSP
401: VDWCVGQVRK LAAGGGHSAV LTDAFSLKEL CEFQLADSVN LSNASEIQDV AFRMGSEALA RLCERLREQL LDGDFTNGEE VY
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR23]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.