Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G372300.1 | Wheat | cytosol | 96.93 | 96.11 |
| TraesCS1B01G384600.1 | Wheat | cytosol | 96.17 | 95.71 |
| HORVU1Hr1G078890.1 | Barley | cytosol | 96.07 | 95.43 |
| Os05t0545200-00 | Rice | cytosol | 75.86 | 78.11 |
| EES19890 | Sorghum | cytosol | 75.19 | 76.96 |
| Zm00001d038882_P002 | Maize | cytosol | 74.62 | 73.84 |
| CDY66504 | Canola | cytosol | 46.93 | 59.39 |
| VIT_05s0049g01140.t01 | Wine grape | cytosol | 56.8 | 55.89 |
| CDY12764 | Canola | cytosol | 53.26 | 53.05 |
| CDX85076 | Canola | cytosol | 52.49 | 52.79 |
| Solyc03g005590.1.1 | Tomato | cytosol, plastid | 54.02 | 52.66 |
| PGSC0003DMT400034994 | Potato | cytosol | 52.2 | 52.66 |
| AT3G23270.2 | Thale cress | cytosol | 52.39 | 51.9 |
| KRH31700 | Soybean | cytosol | 53.07 | 51.39 |
| KRH69117 | Soybean | cytosol | 53.07 | 51.39 |
| Bra023740.1-P | Field mustard | cytosol | 52.3 | 51.22 |
| KRH00393 | Soybean | cytosol | 52.01 | 50.8 |
| CDY49416 | Canola | cytosol | 53.16 | 49.6 |
| AT4G14368.1 | Thale cress | cytosol | 52.49 | 49.55 |
| CDX77534 | Canola | cytosol | 52.39 | 49.23 |
| KRH40796 | Soybean | cytosol | 35.34 | 49.2 |
| TraesCS1A01G020400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 39.75 | 45.76 |
| TraesCS2A01G581400.1 | Wheat | cytosol | 46.65 | 45.51 |
| TraesCS3A01G512900.1 | Wheat | cytosol | 39.37 | 45.12 |
| Bra014931.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 50.38 | 41.42 |
| TraesCS1A01G240600.2 | Wheat | cytosol | 43.49 | 41.39 |
| TraesCS7A01G185400.1 | Wheat | cytosol | 38.79 | 40.02 |
| KRH65503 | Soybean | cytosol, mitochondrion, nucleus | 39.94 | 39.87 |
| TraesCS6A01G261000.1 | Wheat | cytosol | 30.08 | 34.39 |
| TraesCS2A01G456700.1 | Wheat | cytosol, nucleus, peroxisome | 33.43 | 33.17 |
| TraesCS2A01G306400.3 | Wheat | cytosol | 12.84 | 30.25 |
| TraesCS6A01G153100.1 | Wheat | golgi | 12.84 | 28.51 |
| TraesCS1A01G076400.1 | Wheat | mitochondrion | 11.4 | 28.4 |
| TraesCS7A01G284800.1 | Wheat | cytosol | 10.54 | 27.57 |
| TraesCS5A01G364400.2 | Wheat | mitochondrion | 11.49 | 27.4 |
| TraesCS3A01G319000.1 | Wheat | cytosol | 10.15 | 25.85 |
| TraesCS2A01G236300.4 | Wheat | cytosol | 11.88 | 25.25 |
| TraesCS5A01G173400.1 | Wheat | cytosol | 10.44 | 22.76 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:BRX_N | InterPro:Brevis_radix_dom |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000408 | InterPro:IPR009091 |
| InterPro:IPR011993 | InterPro:IPR013083 | InterPro:IPR013591 | InterPro:IPR017455 | PFAM:PF00415 | PFAM:PF01363 |
| PFAM:PF08381 | PFAM:PF13713 | InterPro:PH-like_dom_sf | PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 |
| PFscan:PS50178 | PFscan:PS51514 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF238 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens |
| SMART:SM00064 | SUPFAM:SSF50729 | SUPFAM:SSF50985 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS1A01G366800 | EnsemblPlants:TraesCS1A01G366800.1 |
| InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | TIGR:cd00065 | TIGR:cd13365 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:545528389..545534644
Molecular Weight (calculated)
113741.0 Da
IEP (calculated)
8.554
GRAVY (calculated)
-0.450
Length
1044 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTPDDNALIT LKKGSKLIKY SRKGKPKIRE FRLSSDETAL VWYSHNKEKC LRLSSVSKII PGQRTAVFRR FLRPEKDYLS FSLIYKNGLR SLDLVCKDQA
0101: EVEVWFSTLE TLITSCRVNF PTDFQSDRIS FSDEVSQYQD AYDTRLEIAS SINRSYYSAG YGAAYPLNSS RADVRSDRAN MLRVSTGDSS RISISSSVPS
0201: SSSQGSGPDD IESLGDVYVW GEVWTDVLPP DGSSNFLCSK TDVLIPKPLE SDVVLDVQQI SCGSRHIALT TRQGEVFTWG EELGGRLGHG TDEDISRPKL
0301: VESLAVSNVE YIACGEFHTC AVTASGDLYN WGDGSYNAGL LGHGLGASHW LPKRVSGPLE GLQVLSVACG SWHSALAMSS GKVFTFGDGT FGALGHGNRD
0401: SVSYPKEVES LSGFRTMKVA CGVWHSAAIV ETNSQTGMNV VSRKLFTWGD GDKNRLGHGD KEARLVPTVV QALVDNNFHQ VACGHSMTVA LATSGHVFTM
0501: GSSSNGQLGN PKADGKLPCQ VQDKLNSELV EEISCGSNHV AVLTSRSEVY TWGMGANGRL GHGGIEDKKK PTIVDALKDR HVKSIACGSN FTTCICIHKW
0601: VSGADQSVCS GCRQPFGFTR KRHNCYNCGL VHCHACSSRK VLKAALAPTP GKPHRVCDSC FMKLKAADSG GTNSPYNNKK SVMTRRSVDI KDKSERPDIR
0701: PSRLATAATA EPVKYADAKS VRSEMKPDPV SNARAPQGPA TALAVPTSFV KPMGMGGMGG MGGMGGMGMG MGMGMGVNMA PMGMGMPVVS QSHKKPSPSP
0801: AMTSALSVKS DTKDIDNLKK TNETLNQDIS KLQTQVNKLK QKCEVQDEQL QKTERRAKSA ASLAAEESTR RNSMLDFIRF LDTELKGIAD KVPAEFSDSI
0901: KDLQSQSEKY LTGQCSHPPE AISGNEQPRL PIGGMHEITH HGRSASMGNL DGTSLTSESP CHRIMESNGR APGDFAPKYG THGEVQLIEQ FEPGVHVTLI
1001: QLRDGTKVFK RVRFSKRRFA EQQAEEWWRE NQERVFRKYN HAPT
0101: EVEVWFSTLE TLITSCRVNF PTDFQSDRIS FSDEVSQYQD AYDTRLEIAS SINRSYYSAG YGAAYPLNSS RADVRSDRAN MLRVSTGDSS RISISSSVPS
0201: SSSQGSGPDD IESLGDVYVW GEVWTDVLPP DGSSNFLCSK TDVLIPKPLE SDVVLDVQQI SCGSRHIALT TRQGEVFTWG EELGGRLGHG TDEDISRPKL
0301: VESLAVSNVE YIACGEFHTC AVTASGDLYN WGDGSYNAGL LGHGLGASHW LPKRVSGPLE GLQVLSVACG SWHSALAMSS GKVFTFGDGT FGALGHGNRD
0401: SVSYPKEVES LSGFRTMKVA CGVWHSAAIV ETNSQTGMNV VSRKLFTWGD GDKNRLGHGD KEARLVPTVV QALVDNNFHQ VACGHSMTVA LATSGHVFTM
0501: GSSSNGQLGN PKADGKLPCQ VQDKLNSELV EEISCGSNHV AVLTSRSEVY TWGMGANGRL GHGGIEDKKK PTIVDALKDR HVKSIACGSN FTTCICIHKW
0601: VSGADQSVCS GCRQPFGFTR KRHNCYNCGL VHCHACSSRK VLKAALAPTP GKPHRVCDSC FMKLKAADSG GTNSPYNNKK SVMTRRSVDI KDKSERPDIR
0701: PSRLATAATA EPVKYADAKS VRSEMKPDPV SNARAPQGPA TALAVPTSFV KPMGMGGMGG MGGMGGMGMG MGMGMGVNMA PMGMGMPVVS QSHKKPSPSP
0801: AMTSALSVKS DTKDIDNLKK TNETLNQDIS KLQTQVNKLK QKCEVQDEQL QKTERRAKSA ASLAAEESTR RNSMLDFIRF LDTELKGIAD KVPAEFSDSI
0901: KDLQSQSEKY LTGQCSHPPE AISGNEQPRL PIGGMHEITH HGRSASMGNL DGTSLTSESP CHRIMESNGR APGDFAPKYG THGEVQLIEQ FEPGVHVTLI
1001: QLRDGTKVFK RVRFSKRRFA EQQAEEWWRE NQERVFRKYN HAPT
0001: MKTDGMADPS SYVNHDRDID QALVSLKKGT QLLKYSRKGR PKFRSFRLSP DETTLFWLSH GEEKGLKLAT VSRILPGQRT AVFRRYLRPE KDYLSFSLIY
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEVSIHDSDC FSTGRPSTAS IDFAPNNTRR GRTSIDLGIQ NSPTKFGSSD VGYERGNMLR
0201: PSTDGFRISV SSTPSCSTGT SGPDDIESLG DVYVWGEVWS DGISPDGVVN STTVKIDVLI PKPLESNVVL DVHQIACGVR HIALVTRQGE VFTWEEEAGG
0301: RLGHGIQVDV CRPKLVEFLA LTNIDFVACG EYHTCAVSTS GDLFTWGDGI HNVGLLGHGS DLSHWIPKRV SGPVEGLQVL SVACGTWHSA LATANGKLFT
0401: FGDGAFGVLG HGDRESVSYP KEVKMLSGLK TLKVACGVWH TVAIVEVMNQ TGTSTSSRKL FTWGDGDKNR LGHGNKETYL LPTCVSSLID YNFNQIACGH
0501: TFTVALTTSG HVFTMGGTSH GQLGSSNSDG KLPCLVQDRL VGEFVEEISC GDHHVAVLTS RSEVFTWGKG SNGRLGHGDK DDRKTPTLVE ALRERHVKSI
0601: SCGSNFTSSI CIHKWVSGAD QSVCSGCRQA FGFTRKRHNC YNCGLVHCHA CSSKKALKAA LAPTPGKPHR VCDACYTKLK AGESGYNSNV ANRNSTTPTR
0701: SLDGTGRPDR DIRSSRILLS PKTEPVKYSE VRSSRSESSI VRASQVPALQ QLRDVAFPSS LSAIQNAFKP VASSSTSTLP SGTRSSRISS PPRSSGFSRG
0801: MIDTLKKSNG VINKEMTKLQ SQIKNLKEKC DNQGTEIQRL KKTAREASDL AVKHSSKHKA ATEVMKSVAE HLRELKEKLP PEVSRCEAFE SMNSQAEAYL
0901: NASEASESCL PTTSLGMGQR DPTPSTNTQD QNIEEKQSSN GGNMRSQEPS GTTEASSSSK GGGKELIEQF EPGVYVTYVL HKNGGKIFRR VRFSKRRFDE
1001: HQAEEWWNSK KDRLLKRYSH HASSSSPTAS DSVPTPTQPQ PPASDSVPTP TQPQPPASDS VPTPTQPQPP ASPTQPNSDQ AEDSKEVLDE S
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEVSIHDSDC FSTGRPSTAS IDFAPNNTRR GRTSIDLGIQ NSPTKFGSSD VGYERGNMLR
0201: PSTDGFRISV SSTPSCSTGT SGPDDIESLG DVYVWGEVWS DGISPDGVVN STTVKIDVLI PKPLESNVVL DVHQIACGVR HIALVTRQGE VFTWEEEAGG
0301: RLGHGIQVDV CRPKLVEFLA LTNIDFVACG EYHTCAVSTS GDLFTWGDGI HNVGLLGHGS DLSHWIPKRV SGPVEGLQVL SVACGTWHSA LATANGKLFT
0401: FGDGAFGVLG HGDRESVSYP KEVKMLSGLK TLKVACGVWH TVAIVEVMNQ TGTSTSSRKL FTWGDGDKNR LGHGNKETYL LPTCVSSLID YNFNQIACGH
0501: TFTVALTTSG HVFTMGGTSH GQLGSSNSDG KLPCLVQDRL VGEFVEEISC GDHHVAVLTS RSEVFTWGKG SNGRLGHGDK DDRKTPTLVE ALRERHVKSI
0601: SCGSNFTSSI CIHKWVSGAD QSVCSGCRQA FGFTRKRHNC YNCGLVHCHA CSSKKALKAA LAPTPGKPHR VCDACYTKLK AGESGYNSNV ANRNSTTPTR
0701: SLDGTGRPDR DIRSSRILLS PKTEPVKYSE VRSSRSESSI VRASQVPALQ QLRDVAFPSS LSAIQNAFKP VASSSTSTLP SGTRSSRISS PPRSSGFSRG
0801: MIDTLKKSNG VINKEMTKLQ SQIKNLKEKC DNQGTEIQRL KKTAREASDL AVKHSSKHKA ATEVMKSVAE HLRELKEKLP PEVSRCEAFE SMNSQAEAYL
0901: NASEASESCL PTTSLGMGQR DPTPSTNTQD QNIEEKQSSN GGNMRSQEPS GTTEASSSSK GGGKELIEQF EPGVYVTYVL HKNGGKIFRR VRFSKRRFDE
1001: HQAEEWWNSK KDRLLKRYSH HASSSSPTAS DSVPTPTQPQ PPASDSVPTP TQPQPPASDS VPTPTQPQPP ASPTQPNSDQ AEDSKEVLDE S
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:F4JVE8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.