Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G366800.1 | Wheat | cytosol | 78.11 | 75.86 |
| EES19890 | Sorghum | cytosol | 76.23 | 75.78 |
| HORVU1Hr1G078890.1 | Barley | cytosol | 78.4 | 75.64 |
| TraesCS1B01G384600.1 | Wheat | cytosol | 77.51 | 74.93 |
| TraesCS1D01G372300.1 | Wheat | cytosol | 77.61 | 74.74 |
| Zm00001d038882_P002 | Maize | cytosol | 75.64 | 72.7 |
| Os01t0700200-01 | Rice | cytosol | 69.53 | 67.53 |
| CDY66504 | Canola | cytosol | 46.35 | 56.97 |
| Os01t0964800-01 | Rice | mitochondrion | 31.36 | 54.92 |
| VIT_05s0049g01140.t01 | Wine grape | cytosol | 57.1 | 54.57 |
| PGSC0003DMT400034994 | Potato | cytosol | 53.75 | 52.66 |
| CDY12764 | Canola | cytosol | 52.76 | 51.05 |
| Solyc03g005590.1.1 | Tomato | cytosol, plastid | 53.85 | 50.98 |
| KRH40796 | Soybean | cytosol | 37.38 | 50.53 |
| KRH31700 | Soybean | cytosol | 53.25 | 50.09 |
| KRH69117 | Soybean | cytosol | 53.25 | 50.09 |
| KRH00393 | Soybean | cytosol | 52.56 | 49.86 |
| AT3G23270.2 | Thale cress | cytosol | 51.48 | 49.53 |
| CDX85076 | Canola | cytosol | 50.59 | 49.42 |
| Bra023740.1-P | Field mustard | cytosol | 51.78 | 49.25 |
| CDY49416 | Canola | cytosol | 52.56 | 47.63 |
| AT4G14368.1 | Thale cress | cytosol | 51.68 | 47.38 |
| CDX77534 | Canola | cytosol | 50.79 | 46.35 |
| Os04t0686200-01 | Rice | plasma membrane | 47.34 | 45.41 |
| Os05t0106700-00 | Rice | mitochondrion | 41.52 | 44.79 |
| Os05t0384800-01 | Rice | cytosol | 44.58 | 41.62 |
| KRH65503 | Soybean | cytosol, mitochondrion, nucleus | 42.7 | 41.4 |
| Bra014931.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 48.82 | 38.98 |
| Os01t0952300-00 | Rice | cytosol | 43.79 | 38.85 |
| Os04t0583700-00 | Rice | cytosol | 31.07 | 30.46 |
| Os04t0435700-01 | Rice | plasma membrane | 13.61 | 30.46 |
| Os02t0554100-01 | Rice | cytosol, plasma membrane | 13.31 | 29.8 |
| Os11t0545800-01 | Rice | mitochondrion | 12.23 | 29.18 |
| Os01t0777800-01 | Rice | cytosol | 10.65 | 26.93 |
| Os08t0430700-02 | Rice | cytosol | 9.86 | 25.32 |
| Os09t0560450-01 | Rice | mitochondrion | 10.75 | 24.94 |
| Os12t0284000-01 | Rice | cytosol | 12.23 | 23.22 |
| Os04t0226400-01 | Rice | plastid | 4.93 | 23.04 |
| Os02t0684900-01 | Rice | cytosol | 9.47 | 22.27 |
| Os03t0599600-01 | Rice | mitochondrion | 4.14 | 22.11 |
| Os02t0597000-01 | Rice | cytosol | 11.64 | 21.97 |
| Os08t0430600-01 | Rice | plastid | 2.76 | 17.61 |
| Os09t0560500-01 | Rice | mitochondrion, plastid | 1.58 | 7.69 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A0N7KL66 | ProteinID:BAS95161.1 |
| InterPro:BRX_N | InterPro:Brevis_radix_dom | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR000408 | InterPro:IPR001849 | InterPro:IPR009091 | InterPro:IPR011993 | InterPro:IPR013083 | InterPro:IPR013591 |
| InterPro:IPR017455 | EnsemblPlantsGene:Os05g0545200 | EnsemblPlants:Os05t0545200-00 | PFAM:PF00415 | PFAM:PF01363 | PFAM:PF08381 |
| PFAM:PF13713 | InterPro:PH-like_dom_sf | InterPro:PH_domain | PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50003 |
| PFscan:PS50012 | PFscan:PS50178 | PFscan:PS51514 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF238 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | SMART:SM00064 | SUPFAM:SSF50729 | SUPFAM:SSF50985 | SUPFAM:SSF57903 | UniParc:UPI000393BCC3 |
| InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
Similar to zinc ion binding. (Os05t0545200-00)
Coordinates
chr5:-:27057869..27062828
Molecular Weight (calculated)
110800.0 Da
IEP (calculated)
8.065
GRAVY (calculated)
-0.431
Length
1014 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKQTGRYLSF DIEIVKDENT LVWYSHNKEK CLRLSSVSKV IPGQRTAVFR RFLRPEKDYL SFSLIYKNGQ RSLDLVCKDQ AEVEVWFSTL ESLITSCRLN
0101: FLNDGQTDRV SFSEDVTIYQ DSTSYDTTLD IASSITRSFN SAGYSTPNSL NSIRADVGSD RVNMLRASTG DNSRVSISSA PSSSSQSSGL DDIESLGDVY
0201: VWGEVWTEVL PSEGSSNYLC SKTDFLIPKP LESDVVLDVQ QIACGSRHIG LTTRQGEVFT WGEELGGRLG HGTDTDICRP KLVESLAVSN VEYIACGEFH
0301: TCVVTASGDL YDWGDGSYNA GLLGHGTGVS HWLPKRVSGP LEGLQVLSVA CGSWHSALTM SSGKLFTFGD GTFGSLGHGD RESVAYPKEV EALSGFRAMK
0401: VACGVWHSAA IVEISGQAST NAMSRKLFTW GDGDKNRLGH GDKEAKLVPT CVQALVDHNF HQVACGHSMT VALATSGHVF TMGSSNNGQL GNPKADGKQP
0501: CMVQDKLGNE LVEEISCGSN HVAALTSRSE VYTWGMGANG RLGHGSVEDK KKPTLVDALK DRHVKSISCG SNFTTCICIH KWVSGADQSV CSGCRQPFGF
0601: TRKRHNCYNC GLVHCHACSS RKVLKAALAP TPGKPHRVCD SCFMKLKAAD TGVISSYNKR NVITRRSIDI KDKLERPEIR PSRLATTSPA EPVKYQETKN
0701: VRNETKPADP MSMMKASQVP AMLQFKDMAF AGTFGTVPTT VKSMTMGGQM QMGMPMFSPS PPSKKPSPPP ATASPLIGKV DNDGLKKTNE LLNQDISKLQ
0801: SQVNKLKQKC ETQDEQLQKA ERKAKQAASM ASEESARRNT VLDFVKHLDS ELKVIADRVP GDVADNLKTL QSQSERFLAG QSSNLVEITG LTGHDIGHHR
0901: SSSTGSLPVS QDGSSGNASG SSIAMASDSP CHRIMENNLK APGDFAPKYG THGEVQLIEQ FEPGVYVTLI QLRDGTKVFK RVRFSKRRFA EQQAEEWWRE
1001: NQERVFKKYN HPTN
0101: FLNDGQTDRV SFSEDVTIYQ DSTSYDTTLD IASSITRSFN SAGYSTPNSL NSIRADVGSD RVNMLRASTG DNSRVSISSA PSSSSQSSGL DDIESLGDVY
0201: VWGEVWTEVL PSEGSSNYLC SKTDFLIPKP LESDVVLDVQ QIACGSRHIG LTTRQGEVFT WGEELGGRLG HGTDTDICRP KLVESLAVSN VEYIACGEFH
0301: TCVVTASGDL YDWGDGSYNA GLLGHGTGVS HWLPKRVSGP LEGLQVLSVA CGSWHSALTM SSGKLFTFGD GTFGSLGHGD RESVAYPKEV EALSGFRAMK
0401: VACGVWHSAA IVEISGQAST NAMSRKLFTW GDGDKNRLGH GDKEAKLVPT CVQALVDHNF HQVACGHSMT VALATSGHVF TMGSSNNGQL GNPKADGKQP
0501: CMVQDKLGNE LVEEISCGSN HVAALTSRSE VYTWGMGANG RLGHGSVEDK KKPTLVDALK DRHVKSISCG SNFTTCICIH KWVSGADQSV CSGCRQPFGF
0601: TRKRHNCYNC GLVHCHACSS RKVLKAALAP TPGKPHRVCD SCFMKLKAAD TGVISSYNKR NVITRRSIDI KDKLERPEIR PSRLATTSPA EPVKYQETKN
0701: VRNETKPADP MSMMKASQVP AMLQFKDMAF AGTFGTVPTT VKSMTMGGQM QMGMPMFSPS PPSKKPSPPP ATASPLIGKV DNDGLKKTNE LLNQDISKLQ
0801: SQVNKLKQKC ETQDEQLQKA ERKAKQAASM ASEESARRNT VLDFVKHLDS ELKVIADRVP GDVADNLKTL QSQSERFLAG QSSNLVEITG LTGHDIGHHR
0901: SSSTGSLPVS QDGSSGNASG SSIAMASDSP CHRIMENNLK APGDFAPKYG THGEVQLIEQ FEPGVYVTLI QLRDGTKVFK RVRFSKRRFA EQQAEEWWRE
1001: NQERVFKKYN HPTN
0001: MKTDGMADPS SYVNHDRDID QALVSLKKGT QLLKYSRKGR PKFRSFRLSP DETTLFWLSH GEEKGLKLAT VSRILPGQRT AVFRRYLRPE KDYLSFSLIY
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEIHDSDCFS TGRPSTASID FAPNNTRRGR TSIDLGIQNS PTKFGSSDVG YERGNMLRPS
0201: TDGFRISVSS TPSCSTGTSG PDDIESLGDV YVWGEVWSDG ISPDGVVNST TVKIDVLIPK PLESNVVLDV HQIACGVRHI ALVTRQGEVF TWEEEAGGRL
0301: GHGIQVDVCR PKLVEFLALT NIDFVACGEY HTCAVSTSGD LFTWGDGIHN VGLLGHGSDL SHWIPKRVSG PVEGLQVLSV ACGTWHSALA TANGKLFTFG
0401: DGAFGVLGHG DRESVSYPKE VKMLSGLKTL KVACGVWHTV AIVEVMNQTG TSTSSRKLFT WGDGDKNRLG HGNKETYLLP TCVSSLIDYN FNQIACGHTF
0501: TVALTTSGHV FTMGGTSHGQ LGSSNSDGKL PCLVQDRLVG EFVEEISCGD HHVAVLTSRS EVFTWGKGSN GRLGHGDKDD RKTPTLVEAL RERHVKSISC
0601: GSNFTSSICI HKWVSGADQS VCSGCRQAFG FTRKRHNCYN CGLVHCHACS SKKALKAALA PTPGKPHRVC DACYTKLKAG ESGYNSNVAN RNSTTPTRSL
0701: DGTGRPDRDI RSSRILLSPK TEPVKYSEVR SSRSESSIVR ASQVPALQQL RDVAFPSSLS AIQNAFKPVA SSSTSTLPSG TRSSRISSPP RSSGFSRGMI
0801: DTLKKSNGVI NKEMTKLQSQ IKNLKEKCDN QGTEIQRLKK TAREASDLAV KHSSKHKAAT EVMKSVAEHL RELKEKLPPE VSRCEAFESM NSQAEAYLNA
0901: SEASESCLPT TSLGMGQRDP TPSTNTQDQN IEEKQSSNGG NMRSQEPSGT TEASSSSKGG GKELIEQFEP GVYVTYVLHK NGGKIFRRVR FSKRRFDEHQ
1001: AEEWWNSKKD RLLKRYSHHA SSSSPTASDS VPTPTQPQPP ASDSVPTPTQ PQPPASDSVP TPTQPQPPAS PTQPNSDQAE DSKEVLDES
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEIHDSDCFS TGRPSTASID FAPNNTRRGR TSIDLGIQNS PTKFGSSDVG YERGNMLRPS
0201: TDGFRISVSS TPSCSTGTSG PDDIESLGDV YVWGEVWSDG ISPDGVVNST TVKIDVLIPK PLESNVVLDV HQIACGVRHI ALVTRQGEVF TWEEEAGGRL
0301: GHGIQVDVCR PKLVEFLALT NIDFVACGEY HTCAVSTSGD LFTWGDGIHN VGLLGHGSDL SHWIPKRVSG PVEGLQVLSV ACGTWHSALA TANGKLFTFG
0401: DGAFGVLGHG DRESVSYPKE VKMLSGLKTL KVACGVWHTV AIVEVMNQTG TSTSSRKLFT WGDGDKNRLG HGNKETYLLP TCVSSLIDYN FNQIACGHTF
0501: TVALTTSGHV FTMGGTSHGQ LGSSNSDGKL PCLVQDRLVG EFVEEISCGD HHVAVLTSRS EVFTWGKGSN GRLGHGDKDD RKTPTLVEAL RERHVKSISC
0601: GSNFTSSICI HKWVSGADQS VCSGCRQAFG FTRKRHNCYN CGLVHCHACS SKKALKAALA PTPGKPHRVC DACYTKLKAG ESGYNSNVAN RNSTTPTRSL
0701: DGTGRPDRDI RSSRILLSPK TEPVKYSEVR SSRSESSIVR ASQVPALQQL RDVAFPSSLS AIQNAFKPVA SSSTSTLPSG TRSSRISSPP RSSGFSRGMI
0801: DTLKKSNGVI NKEMTKLQSQ IKNLKEKCDN QGTEIQRLKK TAREASDLAV KHSSKHKAAT EVMKSVAEHL RELKEKLPPE VSRCEAFESM NSQAEAYLNA
0901: SEASESCLPT TSLGMGQRDP TPSTNTQDQN IEEKQSSNGG NMRSQEPSGT TEASSSSKGG GKELIEQFEP GVYVTYVLHK NGGKIFRRVR FSKRRFDEHQ
1001: AEEWWNSKKD RLLKRYSHHA SSSSPTASDS VPTPTQPQPP ASDSVPTPTQ PQPPASDSVP TPTQPQPPAS PTQPNSDQAE DSKEVLDES
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:F4JVE8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.