Factsheet for Os05t0384800-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G240700.1	Wheat	cytosol	91.25	90.67
TraesCS1B01G252700.2	Wheat	cytosol	91.16	90.41
TraesCS1A01G240600.2	Wheat	cytosol	91.16	90.25
HORVU1Hr1G056870.2	Barley	cytosol, endoplasmic reticulum, nucleus	91.16	88.0
HORVU0Hr1G028990.2	Barley	cytosol	31.12	85.79
Os01t0952300-00	Rice	cytosol	84.53	80.31
GSMUA_Achr5P08220_001	Banana	cytosol	77.72	76.73
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	65.19	75.72
VIT_06s0009g03550.t01	Wine grape	nucleus	75.32	73.89
KRH73555	Soybean	nucleus	75.14	73.65
KRH14571	Soybean	nucleus	75.05	73.62
Solyc11g065120.1.1	Tomato	cytosol	75.6	72.72
KRG99075	Soybean	nucleus	74.03	72.69
AT5G12350.1	Thale cress	nucleus	71.36	72.09
KRH45937	Soybean	nucleus	73.39	71.87
Solyc12g099740.1.1	Tomato	nucleus	67.77	71.8
Bra008895.1-P	Field mustard	nucleus	70.17	71.62
CDX85690	Canola	nucleus	70.44	71.5
CDX69686	Canola	nucleus	70.44	71.5
VIT_13s0067g03380.t01	Wine grape	endoplasmic reticulum, extracellular	72.1	71.31
CDX91165	Canola	nucleus	70.17	71.02
CDX97187	Canola	nucleus	69.06	70.89
Bra006504.1-P	Field mustard	cytosol	71.55	70.44
CDX92532	Canola	nucleus	71.09	69.3
AT5G19420.2	Thale cress	mitochondrion	72.28	68.92
CDY13998	Canola	nucleus	70.72	68.82
CDX88891	Canola	cytosol, mitochondrion, nucleus	71.64	68.55
Bra023374.1-P	Field mustard	nucleus	70.17	68.53
CDX70876	Canola	cytosol	69.98	68.16
Bra002235.1-P	Field mustard	nucleus	69.61	67.86
Os01t0964800-01	Rice	mitochondrion	29.1	54.58
Os04t0686200-01	Rice	plasma membrane	45.12	46.36
Os05t0106700-00	Rice	mitochondrion	39.41	45.53
Os05t0545200-00	Rice	cytosol	41.62	44.58
Os01t0700200-01	Rice	cytosol	42.17	43.87
Os04t0583700-00	Rice	cytosol	34.44	36.17
Os04t0435700-01	Rice	plasma membrane	14.92	35.76
Os02t0554100-01	Rice	cytosol, plasma membrane	14.82	35.54
Os11t0545800-01	Rice	mitochondrion	12.15	31.06
Os09t0560450-01	Rice	mitochondrion	12.06	29.98
Os08t0430700-02	Rice	cytosol	10.22	28.1
Os01t0777800-01	Rice	cytosol	10.04	27.18
Os04t0226400-01	Rice	plastid	5.25	26.27
Os12t0284000-01	Rice	cytosol	12.52	25.47
Os03t0599600-01	Rice	mitochondrion	4.24	24.21
Os02t0597000-01	Rice	cytosol	11.69	23.65
Os02t0684900-01	Rice	cytosol	9.12	22.97
Os08t0430600-01	Rice	plastid	2.67	18.24
Os09t0560500-01	Rice	mitochondrion, plastid	1.66	8.65

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4338654	ProteinID:BAF17330.1
ProteinID:BAS93799.1	InterPro:BRX_N	InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR000408	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591
InterPro:IPR017455	EnsemblPlantsGene:Os05g0384800	EnsemblPlants:Os05t0384800-01	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381
PFAM:PF13713	PFAM:PF16627	InterPro:PH-like_dom_sf	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012
PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF212	UniProt:Q0DIJ3	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0000E124A0
RefSeq:XP_015639716.1	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Similar to Chromosome condensation regulator protein (Fragment). (Os05t0384800-01)

Coordinates

chr5:-:18586998..18595443

Molecular Weight (calculated)

117488.0 Da

IEP (calculated)

8.869

GRAVY (calculated)

-0.462

Length

1086 amino acids

Sequence
(BLAST)

0001: MSDASSDLGG ARPGAVERDI EQAITALKKG AYLLKYGRRG KPKFCPFRLS NDESILIWFS GKEEKQLRLS HVSRIIPGQR TAIFQRYPRP EKECQSFSLI
0101: SHDRSLDIIC KDKDEAEVWF AGLKTLITRS HQRKWRTESR SDMLSSGTTS PRTYTRRSSP LSSPFSSNDS VHKDGVENYR LRSPFGSPPK VGLEKAFSDI
0201: VSYAAPPKPF FPSDSNAGSV HSVSSGQSDN TNLHSRGIPM DAFRVSLSSA VSSSSHGSGH DDGDALGDVF IWGEGTGEGI LGGGNSRVGN SSGVNMDCLI
0301: PKPLEFAVKL DVQNISCGGR HATLVTKQGE IYSWGEESGG RLGHGVDCDV PQPKLIDALA NMNIELVACG EYHTCAVTLS GDLYTWGNGT SNSGLLGHGN
0401: EVSHWVPKRV NGPLEGIHVS AISCGPWHTA IVTSAGQLFT FGDGSFGVLG HGDRQSLSVP REVESLKGLR TVRAACGVWH TAAVVEVMVG NSSSSNCSSG
0501: KIFTWGDGDK GRLGHGDKDT RLVPTCVAAL VEPNFCQIAC GHCMTVALTT SGHVYTMGSP VYGQLGNPQA DGMLPVRVEG KLHKNFVEEI SCGAYHVAVL
0601: TSRTEVYTWG KGANGRLGHG DTDDRSSPTL VEALKDKQVR TVVCGINFTA AICIHKWVSG VDQSMCSGCR LPFNLRRKRH NCYNCALVFC HACSSKKSLK
0701: ASLAPNPNKP YRVCDSCYSK LNKGPETDRY SSAKRGSVIQ GFNDSVDEEL ETKSNAQLSR LSSLESFKHM DSRTSKKNKK FEFNSSRVSP IPNGSSHWSG
0801: LNISKSFGSS KKFFSASVPG SRIVSRATSP VSRRASPPRS TTPTPTLGGL TSPRVVDGVK PNDSISQEVL SLRSQVENLT RKSQLLEADL ERTTKQLKEA
0901: ISIAGEETAK CKAAKEVIKS LTAQLKGMAE KLPEGAGLVK NSRLPPLPGI SIPTDISVAS ESLGSPRSSG EPCSNGSNGL LVSNGPTSVR NKLSHPEIPK
1001: NGTRLPDSDS KHESEWVEQD EPGVYITLTA LPGGTRDLKR VRFSRKRFSE TQAEQWWQEN RARVYEQYNV RVVDKSVGSI DNDVHH

Best Arabidopsis Sequence Match ( AT5G19420.1 )
(BLAST)

0001: MSRNGRMTPS DLSRAGPVTR DIEQAITALK KGAYLLKYGR RGKPKFCPFR LSNDESVLIW FSGKEEKHLK LSHVSRIISG QRTPIFQRYP RPEKEYQSFS
0101: LIYDERSLDL ICKDKDEAEV WFSGLKALIS RCHQRKWRTE SRSDGTPSEA NSPRTYTRRS SPLHSPFSSN ESFQKEGSNH LRLHSPYESP PKNGVDKAFS
0201: DMSLYAVPPK GFFPPGSATM SVHSLSSGGS DTLHGHMKGM GMDAFRVSLS SAISSSSHGS GHDDGDTLGD VFMWGEGIGE GVLGGGNHRV GSSLEIKMDS
0301: LLPKALESTI VLDVQNIACG GQHAVLVTKQ GESFSWGEES EGRLGHGVDS NVQHPKLIDA LNTTNIELVA CGEYHSCAVT LSGDLYTWGK GDFGILGHGN
0401: EVSHWVPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFIP REVDSLKGLR TVRAACGVWH TAAVVEVMVG SSSSSNCSSG
0501: KLFTWGDGDK SRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGHVYTMGSP VYGQLGNPHA DGKVPTRVDG KLHKSFVEEI ACGAYHVAVL
0601: TSRTEVYTWG KGSNGRLGHG DADDRNSPTL VESLKDKQVK SIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNFKRKRH NCYNCGLVFC HSCSNKKSLK
0701: ACMAPNPNKP YRVCDRCFNK LKKAMETDPS SHSSLSRRES VNQGSDAIDR DEKLDTRSDG QLARFSLLEP MRQVDSRSKK NKKYEFNSSR VSPIPSGGSH
0801: RGSLNITKSF NPTFGSSKKF FSASVPGSRI ASRATSPISR RPSPPRSTTP TPTLSGLTTP KIVVDDTKRS NDNLSQEVVM LRSQVENLTR KAQLQEVELE
0901: RTTKQLKEAL AIASEESARC KAAKEVIKSL TAQLKDMAER LPVGSARTVK SPSLNSFGSS PDYAAPSSNT LNRPNSRETD SDSLTTVPMF SNGTSTPVFD
1001: SGSYRQQANH AAEAINRIST RSKESEPRNE NEWVEQDEPG VYITLTALAG GARDLKRVRF SRKRFSEKQA EEWWAENRGR VYEQYNVRIV VDKSSVGVGS
1101: EDLGH

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.