Factsheet for Bra002235.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92532	Canola	nucleus	94.79	94.79
Bra006504.1-P	Field mustard	cytosol	87.52	88.4
AT5G19420.2	Thale cress	mitochondrion	88.42	86.48
Bra008895.1-P	Field mustard	nucleus	79.35	83.08
Bra023374.1-P	Field mustard	nucleus	79.8	79.95
VIT_06s0009g03550.t01	Wine grape	nucleus	75.04	75.52
KRH14571	Soybean	nucleus	75.04	75.52
KRH73555	Soybean	nucleus	74.78	75.18
KRG99075	Soybean	nucleus	73.43	73.96
Solyc12g099740.1.1	Tomato	nucleus	67.33	73.17
Solyc11g065120.1.1	Tomato	cytosol	74.15	73.16
KRH45937	Soybean	nucleus	72.71	73.04
HORVU0Hr1G028990.2	Barley	cytosol	25.58	72.33
KXG34127	Sorghum	cytosol	58.35	70.5
Zm00001d042074_P001	Maize	cytosol	68.4	69.84
Os05t0384800-01	Rice	cytosol	67.86	69.61
GSMUA_Achr5P08220_001	Banana	cytosol	68.67	69.55
TraesCS1D01G240700.1	Wheat	cytosol	68.04	69.35
TraesCS1A01G240600.2	Wheat	cytosol	68.04	69.1
TraesCS1B01G252700.2	Wheat	cytosol	67.86	69.04
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	57.81	68.88
Zm00001d011851_P001	Maize	cytosol	68.31	68.07
TraesCS3B01G543500.1	Wheat	cytosol	66.34	67.86
TraesCS3D01G489600.1	Wheat	cytosol	66.16	67.68
HORVU1Hr1G056870.2	Barley	cytosol, endoplasmic reticulum, nucleus	68.22	67.56
HORVU3Hr1G107820.4	Barley	endoplasmic reticulum	65.62	66.52
Os01t0952300-00	Rice	cytosol	66.7	65.0
Bra016214.1-P	Field mustard	cytosol	46.41	49.24
Bra003698.1-P	Field mustard	mitochondrion	47.58	49.21
Bra015708.1-P	Field mustard	cytosol	46.86	48.6
Bra019511.1-P	Field mustard	cytosol	36.98	43.05
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	43.9	42.23
Bra023740.1-P	Field mustard	cytosol	40.13	41.93
Bra038181.1-P	Field mustard	cytosol	33.48	37.23
Bra029198.1-P	Field mustard	cytosol	13.38	36.16
Bra037755.1-P	Field mustard	cytosol	13.11	35.1
Bra024242.1-P	Field mustard	cytosol	12.93	35.04
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	39.77	34.88
Bra016304.1-P	Field mustard	cytosol	11.31	34.15
Bra024664.1-P	Field mustard	cytosol	10.05	31.2
Bra028647.1-P	Field mustard	mitochondrion	11.58	29.52
Bra021435.1-P	Field mustard	cytosol	9.96	28.32
Bra013002.1-P	Field mustard	mitochondrion	10.95	27.54
Bra008654.1-P	Field mustard	cytosol	9.69	27.2
Bra039169.1-P	Field mustard	cytosol	11.49	27.18
Bra027244.1-P	Field mustard	cytosol	11.22	25.51
Bra004253.1-P	Field mustard	plastid	11.31	24.32
Bra004074.1-P	Field mustard	cytosol, plastid	11.13	23.89
Bra017335.1-P	Field mustard	cytosol	11.31	23.73
Bra025182.1-P	Field mustard	cytosol	11.13	23.44
Bra036349.1-P	Field mustard	cytosol, plastid	10.59	21.49
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	11.4	15.45

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	EnsemblPlantsGene:Bra002235
EnsemblPlants:Bra002235.1	EnsemblPlants:Bra002235.1-P	InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR000408	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591
InterPro:IPR017455	UniProt:M4CDF4	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF13713
PFAM:PF16627	InterPro:PH-like_dom_sf	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178
PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF301	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064
SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0002545183	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel
InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT5G19420 (E=0.0) | Ran GTPase binding / chromatin binding / zinc ion binding

Coordinates

chrA10:+:10740703..10745267

Molecular Weight (calculated)

121544.0 Da

IEP (calculated)

8.475

GRAVY (calculated)

-0.449

Length

1114 amino acids

Sequence
(BLAST)

0001: MASDLSRADP VVARDIDIEQ VKFRIDHLYY LSSSLAVTAL KKGAYLLKYG RRGKPKFCPF RLSSDESVLI WFSGKEEKHL KLSHVSRIMH IWPAHSYFSE
0101: MSTSREGISI LFANTRREVI GFGEICKDKD EAQVWFTGLK ALISRSHQRR WRTDSRSDET PSEANSPRTY TRRSSPLHSP FSSNDSFLKD GSNHHCLHSP
0201: YESPPKNGIG KAFSDMTLYA LPPKGYFPSD PASISVHSLS SGASDTIHGM DAFRVSLSSA ISSSSHGSGH DDGDALGDVF IWGEGIGEGV LGGGNHIVGS
0301: SFEIKMDSLV PKALESSIVL DVQNIACGEQ HAVLVTKQGE SFSWGEESEG RLGHGVDSNV QHPKLIDALS TTNIELVACG EYHSCAVSLS GDLYTWGKGD
0401: FGILGHGNEV SHWIPKRVNF LMEGIHVSSI ACGPYHTAVV TSAGQLFTFG DGTFGVLGHG DRKSVFIPRE VDSLKGLRTV RAACGIWHTA AVVEVMVGSS
0501: SSSNCSSGKL FTWGDGDKNR LGHGDKELKL VPTCVAALVE PNFCQVACGH SLTVALTTSG HVYTMGSPVY GQLGNPHADG KLPARVEGKL HKGFVEEIAC
0601: GAYHVAVLTS RTEVYTWGKG SNGRLGHGDV DDRNSPTLVE SLKDKQVKTI ACGSNFTAAV CLHKWASGMD QSMCSGCRQP FNFKRKRHNC YNCGLVFCHS
0701: CSNKKSLKAC MAPNPNKPYR VCDKCFNKLK KATEADGSSH SSLSRRESVN QGSDAVDRDE KLDCRSDGQL ARFSLLEPMK QVDSRTKKNK KYEFNSSRVS
0801: PIPSGGSHRG SLNVTKSFNP TFGSSKKFFS ASVPGSRIVS RATSPISRRL SPPARSTTPT PTLSGLTTPK IVVDDTKRTN DNISQEVVML RSQVESLTRK
0901: AQLQEVELER TTKQLKEALA IASEETARCN AAKDVIKSLT AQLKDMAERL PVGSVRTIKS PSLNSFGSSL DYVSPSSNTL NRPNSRETDA DVPSTVPVFS
1001: NGTSTPVFDG ASYRQQADHA AESINRNSTR AKENEPRNEN EWVEEDEPGV YITLTALAGG ARDLKRVRFS RKRFSEKQAE EWWAENRGRV CEQYNVRIVV
1101: DKSSVGVGSE DLAH

Best Arabidopsis Sequence Match ( AT5G19420.2 )
(BLAST)

0001: MWSGFRDCTR NGRMTPSDLS RAGPVTRDIE QLKIELYSTF GVSKLDSSYI LENKNALHAI TALKKGAYLL KYGRRGKPKF CPFRLSNDES VLIWFSGKEE
0101: KHLKLSHVSR IISGQRTPIF QRYPRPEKEY QSFSLIYDER SLDLICKDKD EAEVWFSGLK ALISRCHQRK WRTESRSDGT PSEANSPRTY TRRSSPLHSP
0201: FSSNESFQKE GSNHLRLHSP YESPPKNGVD KAFSDMSLYA VPPKGFFPPG SATMSVHSLS SGGSDTLHGH MKGMGMDAFR VSLSSAISSS SHGSGHDDGD
0301: TLGDVFMWGE GIGEGVLGGG NHRVGSSLEI KMDSLLPKAL ESTIVLDVQN IACGGQHAVL VTKQGESFSW GEESEGRLGH GVDSNVQHPK LIDALNTTNI
0401: ELVACGEYHS CAVTLSGDLY TWGKGDFGIL GHGNEVSHWV PKRVNFLMEG IHVSSIACGP YHTAVVTSAG QLFTFGDGTF GVLGHGDRKS VFIPREVDSL
0501: KGLRTVRAAC GVWHTAAVVE VMVGSSSSSN CSSGKLFTWG DGDKSRLGHG DKEPKLVPTC VAALVEPNFC QVACGHSLTV ALTTSGHVYT MGSPVYGQLG
0601: NPHADGKVPT RVDGKLHKSF VEEIACGAYH VAVLTSRTEV YTWGKGSNGR LGHGDADDRN SPTLVESLKD KQVKSIACGS NFTAAVCLHK WASGMDQSMC
0701: SGCRQPFNFK RKRHNCYNCG LVFCHSCSNK KSLKACMAPN PNKPYRVCDR CFNKLKKAME TDPSSHSSLS RRESVNQGSD AIDRDEKLDT RSDGQLARFS
0801: LLEPMRQVDS RSKKNKKYEF NSSRVSPIPS GGSHRGSLNI TKSFNPTFGS SKKFFSASVP GSRIASRATS PISRRPSPPR STTPTPTLSG LTTPKIVVDD
0901: TKRSNDNLSQ EVVMLRSQVE NLTRKAQLQE VELERTTKQL KEALAIASEE SARCKAAKEV IKSLTAQLKD MAERLPVGSA RTVKSPSLNS FGSSPDYAAP
1001: SSNTLNRPNS RETDSDSLTT VPMFSNGTST PVFDSGSYRQ QANHAAEAIN RISTRSKESE PRNENEWVEQ DEPGVYITLT ALAGGARDLK RVRFSRKRFS
1101: EKQAEEWWAE NRGRVYEQYN VRIVVDKSSV GVGSEDLGH

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.