Factsheet for Bra028647.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40735	Canola	mitochondrion	100.0	100.0
AT5G08710.1	Thale cress	mitochondrion	86.27	86.87
VIT_07s0031g02850.t01	Wine grape	mitochondrion	63.16	65.71
KRH63955	Soybean	mitochondrion	61.1	64.03
Solyc05g056590.2.1	Tomato	cytosol	39.13	62.18
KRH53977	Soybean	cytosol, mitochondrion, nucleus	45.31	61.88
GSMUA_Achr10P...	Banana	mitochondrion	56.29	58.57
EES09892	Sorghum	mitochondrion	54.92	57.42
HORVU1Hr1G016430.4	Barley	cytosol	51.95	57.18
TraesCS1D01G078800.1	Wheat	mitochondrion	53.78	56.09
TraesCS1A01G076400.1	Wheat	mitochondrion	53.78	56.09
Os11t0545800-01	Rice	mitochondrion	54.0	55.53
Zm00001d052624_P007	Maize	plastid	50.8	48.47
Bra016304.1-P	Field mustard	cytosol	23.57	27.91
Bra024664.1-P	Field mustard	cytosol	21.51	26.18
Bra024242.1-P	Field mustard	cytosol	24.49	26.03
Bra021435.1-P	Field mustard	cytosol	23.34	26.02
Bra029198.1-P	Field mustard	cytosol	24.26	25.73
Bra037755.1-P	Field mustard	cytosol	24.03	25.24
Bra008654.1-P	Field mustard	cytosol	22.88	25.19
Bra013002.1-P	Field mustard	mitochondrion	20.37	20.09
Bra039169.1-P	Field mustard	cytosol	21.28	19.75
Bra027244.1-P	Field mustard	cytosol	21.05	18.78
Bra004253.1-P	Field mustard	plastid	21.74	18.34
Bra004074.1-P	Field mustard	cytosol, plastid	20.14	16.96
Bra025182.1-P	Field mustard	cytosol	19.91	16.45
Bra017335.1-P	Field mustard	cytosol	19.68	16.2
Bra036349.1-P	Field mustard	cytosol, plastid	19.22	15.3
Bra008895.1-P	Field mustard	nucleus	29.98	12.31
Bra023374.1-P	Field mustard	nucleus	30.66	12.05
Bra019511.1-P	Field mustard	cytosol	25.86	11.81
Bra006504.1-P	Field mustard	cytosol	29.52	11.7
Bra002235.1-P	Field mustard	nucleus	29.52	11.58
Bra016214.1-P	Field mustard	cytosol	27.69	11.52
Bra015708.1-P	Field mustard	cytosol	27.92	11.36
Bra038181.1-P	Field mustard	cytosol	25.63	11.18
Bra003698.1-P	Field mustard	mitochondrion	27.46	11.14
Bra023740.1-P	Field mustard	cytosol	27.0	11.07
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	28.83	10.88
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	20.37	10.83
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	26.54	9.13

Protein Annotations

EnsemblPlants:Bra028647.1	EnsemblPlants:Bra028647.1-P	EnsemblPlantsGene:Bra028647	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF245	PFAM:PF00415	PFscan:PS50012
PRINTS:PR00633	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI00025432D0	UniProt:M4EIN2
MapMan:35.1	:	:	:	:	:

Description

AT5G08710 (E=3e-187) | regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-related

Coordinates

chrA02:-:2712877..2715623

Molecular Weight (calculated)

46278.5 Da

IEP (calculated)

7.864

GRAVY (calculated)

-0.154

Length

437 amino acids

Sequence
(BLAST)

001: MLTRALGRVR ISGSTIQRSK NHFTGVFDNS KLDTTIGASR GRRRLSSESG KRFAAMWGSG DYGRLGLGSL ESRWRPAVCS ALSDHSIRAL ACGGAHTLFL
101: TETRRVFATG LNDCGQLGVS HVNTHALEPL EVSGIENDIL HISAGYYHSA AITVDGELYM WGKNTSGQLG LGKNAARVVH VPTKVQALNG ITIKSVALGS
201: EHSVAVTDGG EVLSWGGGGS GRLGHGHESS FFGILKSKSE FTPRLIKELE GIKVKSVAAG LLHTVCTDEN GSAFMFGERS INKMGFGGVR NATTPSIISE
301: VPYAEEVACG GYHTCVVTRG GELYTWGSNE NGCLGTESTY VSHSPVRVEG PFLESTVTHV SCGWKHTAAI SDNKVFTWGW GGSHGTFSDD GHSSGGQLGH
401: GSDVDYAIPA MVNLGKNVRA VHISCGFNHT GAVLEHF

Best Arabidopsis Sequence Match ( AT5G08710.1 )
(BLAST)

001: MLTRAIGRVR IPVSRIQGSN CTSGLLKDSK LGPIGVCCSR WVSSESGKRF AAMWGSGDYG RLGLGNLDSQ WTPAVCSALS DHSITAVACG GAHTLFLTET
101: RRVFATGLND CGQLGVSDVK SHAMDPLEVS GLDKDILHIS AGYYHSAAIT VDGELYMWGK NSSGQLGLGK KAARVVRVPT KVEALHGITI QSVALGSEHS
201: VAVTDGGEVL SWGGGGSGRL GHGHQSSLFG ILRSNSEFTP RLIKELEGIK VTNVAAGLLH SACTDENGSA FMFGEKSINK MGFGGVRNAT TPSIISEVPY
301: AEEVACGGYH TCVVTRGGEL YTWGSNENGC LGTDSTYVSH SPVRVEGPFL ESTVSQVSCG WKHTAAISDN NVFTWGWGGS HGTFSVDGHS SGGQLGHGSD
401: VDYARPAMVD LGKNVRAVHI SCGFNHTAAV LEHF

Arabidopsis Description

RUG1 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.