Factsheet for Bra016214.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47138	Canola	cytosol	98.29	98.57
CDY11586	Canola	cytosol	97.52	97.25
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	86.38	84.14
KRH08750	Soybean	cytosol	44.19	72.84
VIT_18s0166g00210.t01	Wine grape	cytosol	72.48	67.4
KRG91629	Soybean	cytosol	70.19	67.12
KRH35179	Soybean	cytosol	71.05	66.61
KRH30228	Soybean	cytosol	25.43	65.6
Solyc04g071040.2.1	Tomato	cytosol	70.1	65.36
PGSC0003DMT400002081	Potato	cytosol	70.0	65.28
KRH70333	Soybean	cytosol	69.62	65.27
Bra003698.1-P	Field mustard	mitochondrion	66.1	64.44
Bra015708.1-P	Field mustard	cytosol	64.57	63.13
Os01t0964800-01	Rice	mitochondrion	33.9	61.49
KRH08736	Soybean	endoplasmic reticulum	40.29	60.69
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	55.52	59.07
HORVU1Hr1G002740.1	Barley	cytosol, mitochondrion, nucleus, plastid	50.67	58.65
TraesCS1A01G020400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.38	58.32
KRH30227	Soybean	cytosol	24.95	58.09
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.29	58.09
TraesCS1B01G024400.1	Wheat	cytosol, mitochondrion, nucleus	50.1	57.99
Zm00001d011805_P001	Maize	cytosol	50.29	57.89
KXG34192	Sorghum	cytosol	50.0	57.57
GSMUA_Achr8P07850_001	Banana	cytosol	60.57	57.56
HORVU3Hr1G112690.2	Barley	cytosol, plastid	49.24	56.94
TraesCS3D01G522600.2	Wheat	cytosol	47.05	56.85
TraesCS3A01G512900.1	Wheat	cytosol	49.14	56.64
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	49.43	56.6
EES18851	Sorghum	cytosol, plastid	49.24	56.44
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	52.57	56.38
TraesCS3B01G581600.2	Wheat	cytosol	48.67	56.03
Os05t0106700-00	Rice	mitochondrion	50.0	55.85
Zm00001d006773_P001	Maize	cytosol	21.33	55.58
Os04t0686200-01	Rice	plasma membrane	55.24	54.87
EES13137	Sorghum	cytosol	55.52	54.79
HORVU3Hr1G108180.1	Barley	mitochondrion	8.67	54.49
TraesCS2A01G581400.1	Wheat	cytosol	54.29	53.27
TraesCS2D01G589800.1	Wheat	cytosol	54.19	53.18
TraesCS2B01G609200.1	Wheat	cytosol	54.1	53.08
Zm00001d002876_P001	Maize	mitochondrion	54.95	53.08
GSMUA_AchrUn_...	Banana	nucleus	58.29	53.08
HORVU2Hr1G124270.22	Barley	cytosol, mitochondrion, nucleus	54.1	52.79
Bra008895.1-P	Field mustard	nucleus	50.86	50.19
Bra006504.1-P	Field mustard	cytosol	51.24	48.78
Bra023740.1-P	Field mustard	cytosol	49.43	48.69
Bra023374.1-P	Field mustard	nucleus	50.57	47.75
Bra002235.1-P	Field mustard	nucleus	49.24	46.41
Bra019511.1-P	Field mustard	cytosol	35.81	39.29
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	47.43	39.21
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	41.81	37.91
Bra029198.1-P	Field mustard	cytosol	14.57	37.14
Bra024242.1-P	Field mustard	cytosol	14.48	36.98
Bra038181.1-P	Field mustard	cytosol	34.95	36.63
Bra037755.1-P	Field mustard	cytosol	14.48	36.54
Bra016304.1-P	Field mustard	cytosol	10.19	29.0
Bra028647.1-P	Field mustard	mitochondrion	11.52	27.69
Bra039169.1-P	Field mustard	cytosol	12.29	27.39
Bra008654.1-P	Field mustard	cytosol	10.29	27.2
Bra021435.1-P	Field mustard	cytosol	10.0	26.79
Bra024664.1-P	Field mustard	cytosol	9.14	26.74
Bra027244.1-P	Field mustard	cytosol	12.38	26.53
Bra004074.1-P	Field mustard	cytosol, plastid	12.67	25.63
Bra004253.1-P	Field mustard	plastid	12.57	25.48
Bra017335.1-P	Field mustard	cytosol	12.76	25.24
Bra013002.1-P	Field mustard	mitochondrion	10.57	25.06
Bra025182.1-P	Field mustard	cytosol	12.38	24.57
Bra036349.1-P	Field mustard	cytosol, plastid	12.0	22.95
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	11.9	15.21

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	EnsemblPlantsGene:Bra016214
EnsemblPlants:Bra016214.1	EnsemblPlants:Bra016214.1-P	InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083
InterPro:IPR013591	InterPro:IPR017455	UniProt:M4DI87	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381
PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF91	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0002541998
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

AT5G42140 (E=0.0) | zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein

Coordinates

chrA07:+:18837347..18841795

Molecular Weight (calculated)

113614.0 Da

IEP (calculated)

9.143

GRAVY (calculated)

-0.435

Length

1050 amino acids

Sequence
(BLAST)

0001: MADLVSYGSI ERDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDVICKDKV EAEVWIAGLK ALISGQGGRA KIDGWSDGLS IADSRDLTLG SPTNSSVCAS RDFNSVDVPY ASTAFSKSIR TENSVSSERS HVPSGSPNMS
0201: VRGPSTDVFR VSVSSAQSTT SSHGSGPDDR DALGDVYLWG EVPSDKNATS KSNVLVPKPL ESNVVLDVHQ VACGVKHAAL VSRQGEVFTW GEESGGRLGH
0301: GMGKDVTGGP PQLIESLAGS SVDFVACGEF HTCAVTMNGE IYTWGDGTHN AGLLGHGTDV SHWIPKRISG PLEGLRIASV SCGPWHTALV TSTGQLFTFG
0401: DGTFGVLGHG DKETVFYPRE VKSLSGLKTI AVACGVWHAA AVVEVSSSVS SGKLFTWGDG DKGRLGHGDN ETRLKPTCVS SLIDNDFYKV ACGHSLTVGL
0501: TTSGKVYTMG SSVYGQLGNP TADGKLPCLA SNDSVEEVAC GAYHVAVLTS RNEVFTWGKG ANGRLGHGDV EDRNAPTLVE ALKERHVKYI ACGANFTAAI
0601: CLHKWASGAE QTQCSACKQA FGFTKKSHNC YNCGLVHCHS CSSKKSLKAS LAPNPGKPYR VCDSCYSKLS KASEGSVMPR LSGENKDRLD KAELRLAKSG
0701: IPSKIDLIKQ LDSRAARQGR KGETFSLVRT SQTPLLQLRD AFSNVAELRR GPPKPVVTPS GGNSRSVSPF SRRSSPTRSV TPIPSMVGIG FSTSVTESLK
0801: KTNELLNQEV VRLRAQAESL RQRCEVQELE VQKSMKKAQE AMKLASEETA KSEAAKEVIK SLTTQLKDIV KLLPPGAHEA EITRTTHLLN GFEQNGIHFA
0901: NAKGQRSSRS DSVSDTPLTS PLTPPSRSMN GLWRSSQSPR NTDELQSDGV RISNGFSEDG DTRRNSRSSV ATSNASQVEA EWIEQYEPGV YITLLALGDG
1001: TRDLKRVRFS RRRFKEQQAE AWWTENRERV YEKYNIRGTD RPSVQSQLPT

Best Arabidopsis Sequence Match ( AT5G42140.1 )
(BLAST)

0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.