Factsheet for Zm00001d035723_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

mitochondrion 2
plastid 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18851	Sorghum	cytosol, plastid	96.62	96.72
HORVU1Hr1G002740.1	Barley	cytosol, mitochondrion, nucleus, plastid	83.21	84.12
TraesCS1A01G020400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	82.77	83.68
TraesCS1B01G024400.1	Wheat	cytosol, mitochondrion, nucleus	82.55	83.46
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	82.55	83.28
Os05t0106700-00	Rice	mitochondrion	81.79	79.79
Zm00001d011805_P001	Maize	cytosol	75.9	76.32
Zm00001d006773_P001	Maize	cytosol	30.97	70.47
KRH08736	Soybean	endoplasmic reticulum	44.6	58.68
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	59.0	55.26
CDY48550	Canola	cytosol	56.92	53.27
KRG91629	Soybean	cytosol	63.03	52.64
VIT_18s0166g00210.t01	Wine grape	cytosol	64.01	51.99
KRH35179	Soybean	cytosol	63.36	51.88
KRH30227	Soybean	cytosol	25.3	51.44
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	55.29	51.37
Solyc04g071040.2.1	Tomato	cytosol	62.6	50.98
PGSC0003DMT400002081	Potato	cytosol	62.6	50.98
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	59.0	50.19
KRH70333	Soybean	cytosol	60.74	49.73
CDY47138	Canola	cytosol	56.71	49.67
Bra016214.1-P	Field mustard	cytosol	56.6	49.43
CDY11586	Canola	cytosol	56.49	49.19
KRH08750	Soybean	cytosol	34.13	49.14
AT1G76950.1	Thale cress	cytosol	58.89	48.96
Bra003698.1-P	Field mustard	mitochondrion	57.36	48.84
CDX87557	Canola	cytosol	55.73	47.62
Bra015708.1-P	Field mustard	cytosol	55.73	47.58
CDX88324	Canola	cytosol	54.85	47.41
KRH30228	Soybean	cytosol	20.39	45.95
Zm00001d002876_P001	Maize	mitochondrion	52.56	44.34
CDX68076	Canola	cytosol	38.39	42.41
Zm00001d042074_P001	Maize	cytosol	47.87	40.24
Zm00001d038882_P002	Maize	cytosol	45.37	39.43
Zm00001d011851_P001	Maize	cytosol	47.33	38.82
Zm00001d011660_P003	Maize	cytosol	44.38	38.51
Zm00001d003632_P003	Maize	extracellular	15.05	31.15
Zm00001d017641_P004	Maize	cytosol	29.23	31.13
CDY70949	Canola	cytosol	11.01	28.53
Zm00001d051479_P005	Maize	nucleus	32.72	27.88
Zm00001d050380_P004	Maize	cytosol	11.56	27.25
Zm00001d002544_P004	Maize	cytosol, endoplasmic reticulum, nucleus	32.72	27.03
Zm00001d033172_P001	Maize	cytosol	14.07	26.88
Zm00001d032229_P002	Maize	mitochondrion	12.21	26.73
Zm00001d021372_P001	Maize	mitochondrion	12.54	26.62
Zm00001d043280_P001	Maize	cytosol	11.56	25.98
Zm00001d019595_P001	Maize	cytosol	13.09	24.84
Zm00001d005395_P001	Maize	cytosol	12.87	24.43
Zm00001d052624_P007	Maize	plastid	11.67	23.36
Zm00001d050985_P002	Maize	cytosol	11.45	18.88

Protein Annotations

Gene3D:2.130.10.30	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6LI48	ProteinID:AQK79535.1	InterPro:BRX_N
InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408
InterPro:IPR009091	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	PFAM:PF00415	PFAM:PF01363
PFAM:PF08381	PFAM:PF13713	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178
PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF199	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064
SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0008433800	EnsemblPlantsGene:Zm00001d035723	EnsemblPlants:Zm00001d035723_P001	EnsemblPlants:Zm00001d035723_T001
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain

Coordinates

chr6:+:43293215..43297233

Molecular Weight (calculated)

99455.1 Da

IEP (calculated)

8.238

GRAVY (calculated)

-0.400

Length

917 amino acids

Sequence
(BLAST)

001: MLMKGPSSDV LRASISSAPS TSSHGSAQDE CDSLGDVYVW GEVVCDTSVR TGSDTVISST GRIDILLPKP LESNLVLDVY HVDCGVKHAA LVMKNGEVFT
101: WGEDSGGRLG HGTREDCVRP RLVESLTVSN VDFVACGEFH TCAVTTTGEL YTWGDGTYNV GLLGHGNDVG HWIPKRISGA LEGLQVAYVS CGTWHTALIT
201: SMGQLFTFGD GSFGVLGHGD LKSVSYPREV ESLSGLKTIA VACGVWHTAA IVEVIVTRSS SSVKLSAGKL FTWGDGDKHR LGHGDKETRL KPTCVATLID
301: HDFYRVACGH SLTVALTTSG QVLSMGNAVY GQLGNPHSDG RIPCLVEDKI VGEQVLQIAC GSYHVAVLTN RSEVFTWGKG ANGRLGHGDT EDRKVPTLVE
401: ALKDRAVRYI ACGANFTAAI CQYKWVSGAD QSQCSSCRQP FGFTRKRRNC YNCGLVHCNS CTSRKALRAS LAPSPGKPYR VCDSCFLKLN NASDPNAANR
501: RKDPVPYQPV ESNGDAKVGK ASLPSNMEMI RNLDIKAAWQ GKKTDGLSFL RNPQVSSLLQ LSDIALSGGL GMNRSAPRAV HISAARSVTT SRAVSPFSRK
601: PSPPRSTTPV PTAHGLSFSK SATDNIVKAN ELLNQEVERL RAQVDNLRNR CELQELELQK SAKKVLEAMT LVAEESAKSK AAKEVIKSLT AQLKDMAERL
701: PPDHGAYNVN ETKQSHNPNG IDSHAASYSS MNGIHQTRNE LLNASIAHSL NSGRPSSHCN GISGQHKLLG NVSEHSDCST HSLRITAPHD SELPSRRARS
801: SSDEMLTAGS RVDDNLNVDA VSLQSGEDGY KPRGTIPLPS NQVQAEWIEQ YEPGVYITLT TLRDGTRDLK RVRFSRRRFG EHQAENWWNE NREKVYERYN
901: VKSSERVSSA ASTRSAY

Best Arabidopsis Sequence Match ( AT5G42140.1 )
(BLAST)

0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.