Factsheet for Zm00001d011805_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34192	Sorghum	cytosol	96.27	96.27
Zm00001d006773_P001	Maize	cytosol	39.69	89.83
TraesCS3A01G512900.1	Wheat	cytosol	81.8	81.89
HORVU3Hr1G112690.2	Barley	cytosol, plastid	81.47	81.83
TraesCS3D01G522600.2	Wheat	cytosol	77.63	81.47
TraesCS3B01G581600.2	Wheat	cytosol	81.25	81.25
Os01t0964800-01	Rice	mitochondrion	48.36	76.17
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	76.32	75.9
KRH08736	Soybean	endoplasmic reticulum	45.5	59.54
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	59.87	55.77
CDY48550	Canola	cytosol	58.44	54.39
KRG91629	Soybean	cytosol	65.13	54.1
VIT_18s0166g00210.t01	Wine grape	cytosol	65.79	53.14
KRH35179	Soybean	cytosol	64.69	52.68
PGSC0003DMT400002081	Potato	cytosol	64.8	52.49
Solyc04g071040.2.1	Tomato	cytosol	64.8	52.49
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	56.8	52.48
KRH30227	Soybean	cytosol	25.55	51.66
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	60.31	51.02
KRH70333	Soybean	cytosol	62.06	50.54
CDY47138	Canola	cytosol	58.0	50.53
CDY11586	Canola	cytosol	58.22	50.43
Bra016214.1-P	Field mustard	cytosol	57.89	50.29
Bra003698.1-P	Field mustard	mitochondrion	58.88	49.86
KRH08750	Soybean	cytosol	34.65	49.61
AT1G76950.1	Thale cress	cytosol	59.76	49.41
CDX87557	Canola	cytosol	57.13	48.56
CDX88324	Canola	cytosol	56.47	48.54
Bra015708.1-P	Field mustard	cytosol	57.13	48.51
KRH30228	Soybean	cytosol	20.83	46.68
Zm00001d002876_P001	Maize	mitochondrion	53.73	45.08
CDX68076	Canola	cytosol	39.14	43.01
Zm00001d042074_P001	Maize	cytosol	48.79	40.79
Zm00001d011851_P001	Maize	cytosol	48.14	39.27
Zm00001d038882_P002	Maize	cytosol	45.29	39.15
Zm00001d011660_P003	Maize	cytosol	44.3	38.22
Zm00001d017641_P004	Maize	cytosol	30.26	32.06
Zm00001d003632_P003	Maize	extracellular	15.57	32.05
CDY70949	Canola	cytosol	11.73	30.23
Zm00001d051479_P005	Maize	nucleus	33.33	28.25
Zm00001d050380_P004	Maize	cytosol	11.73	27.51
Zm00001d002544_P004	Maize	cytosol, endoplasmic reticulum, nucleus	32.79	26.94
Zm00001d021372_P001	Maize	mitochondrion	12.61	26.62
Zm00001d043280_P001	Maize	cytosol	11.84	26.47
Zm00001d032229_P002	Maize	mitochondrion	12.06	26.25
Zm00001d019595_P001	Maize	cytosol	13.38	25.26
Zm00001d033172_P001	Maize	cytosol	13.27	25.21
Zm00001d005395_P001	Maize	cytosol	13.05	24.64
Zm00001d052624_P007	Maize	plastid	11.29	22.49
Zm00001d050985_P002	Maize	cytosol	11.18	18.35

Protein Annotations

EntrezGene:103636262	Gene3D:2.130.10.30	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6G3Z7	ProteinID:AQK98055.1
InterPro:BRX_N	InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR000408	InterPro:IPR009091	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	PFAM:PF00415
PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012
PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF199	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens
SMART:SM00064	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0004DEAF2C	EnsemblPlantsGene:Zm00001d011805	EnsemblPlants:Zm00001d011805_P001
EnsemblPlants:Zm00001d011805_T001	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Putative regulator of chromosome condensation (RCC1) family protein

Coordinates

chr8:-:161834426..161839733

Molecular Weight (calculated)

98994.3 Da

IEP (calculated)

8.456

GRAVY (calculated)

-0.470

Length

912 amino acids

Sequence
(BLAST)

001: MHTKGASSDA IRVSTSSAPS TSSHGSAQDD YDSSGDVYVW GEVICDNTVR VGPDTVIRST AKADFLLPKP LESKLVLDVY HVDCGVKHAA LVTKNGEVFT
101: WGEESGGRLG HGSREDSVHP RLVESLAICN VDIVACGEFH TCAVTTSGEL YTWGDGTHNI GLLGNGTDVS HWIPKRISGV LEGHQVAYVS CGTWHTALVT
201: SRGQLFTFGD GTFGVLGHGN RESFSCPREV ESLSGLKTIA VACGVWHTAA VVEVIVTQSS SSMSSGKLFT WGDGDKHRLG HGDKEPKLKP TCVASLIDYD
301: FCRIACGHSL TVGLTTSGQV LSMGNTVYGQ LGNPRSDGKL PCLIEDIMGE HVVQVACGSY HVAVLTNKSE VFTWGKGANG RLGHGDVEDR KIPTLVESLR
401: DRAVRHIACG SNFTSAICQH KWVSGAEQSQ CASCRQPFGF TRKRHNCHNC GLVHCNACTS HKVLRAALAP NPAKPYRVCD SCFMKLNSAA YSSTINKKKE
501: VVPRHSGESN HDAKLARAIV PSNLDMIRSL DSKAAKQGKK TDALSFLRTP QMSSLLQLRD ITLSGGIDLN KSVPRAVRTS VRSLNSSRAV SPFSRKPSPP
601: RSTTPVPTTH GLSIAKTAAD SLAKTNEMLS QEVERLRAQV DNLRRRCELQ ELELQKSAKK VQEAMSMVSE ESAKSKAAKE VIKSLTSQLK DMAERLPPDQ
701: GAYDGSEAKQ AHVPNGIEMY ASIYTSMNGI HQPRNESVSA LSTPGLHIGR SSHPNGISNH HQSPGSITEN SEVSAHTHRV SGPPDVENPN RRGHSSSDEM
801: LSASSRADDS SSRDARSLLN GEDGYKSRSA VSLPSNQVQA EWIEQYEPGV YITLTTLRDG TRDLKRVRFS RRRFGEHQAE SWWNENRDKV YEKYNVRSSE
901: RVSSASSIRS GR

Best Arabidopsis Sequence Match ( AT5G42140.1 )
(BLAST)

0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.