Factsheet for VIT_18s0166g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	peroxisome
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08750	Soybean	cytosol	47.03	83.36
KRG91629	Soybean	cytosol	79.63	81.88
KRH35179	Soybean	cytosol	80.87	81.52
PGSC0003DMT400002081	Potato	cytosol	80.43	80.64
Solyc04g071040.2.1	Tomato	cytosol	80.16	80.37
KRH70333	Soybean	cytosol	79.54	80.18
KRH08736	Soybean	endoplasmic reticulum	48.18	78.05
CDY70949	Canola	cytosol	24.09	76.84
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	72.28	75.7
KRH30228	Soybean	cytosol	26.48	73.46
KRH30227	Soybean	cytosol	29.32	73.39
AT1G76950.1	Thale cress	cytosol	71.04	72.71
Bra016214.1-P	Field mustard	cytosol	67.4	72.48
CDY11586	Canola	cytosol	67.58	72.46
CDY47138	Canola	cytosol	67.05	72.3
Bra003698.1-P	Field mustard	mitochondrion	68.29	71.59
CDY48550	Canola	cytosol	61.65	71.02
CDX88324	Canola	cytosol	66.25	70.5
CDX87557	Canola	cytosol	66.87	70.36
CDX68076	Canola	cytosol	51.73	70.36
Bra015708.1-P	Field mustard	cytosol	66.87	70.3
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	60.23	68.9
Os01t0964800-01	Rice	mitochondrion	34.54	67.36
KXG34192	Sorghum	cytosol	53.76	66.56
GSMUA_Achr8P07850_001	Banana	cytosol	64.48	65.88
Zm00001d011805_P001	Maize	cytosol	53.14	65.79
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	52.79	65.57
HORVU3Hr1G112690.2	Barley	cytosol, plastid	52.61	65.42
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	56.69	65.37
TraesCS3A01G512900.1	Wheat	cytosol	52.61	65.2
TraesCS1A01G020400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	52.35	65.16
TraesCS1B01G024400.1	Wheat	cytosol, mitochondrion, nucleus	52.35	65.16
HORVU1Hr1G002740.1	Barley	cytosol, mitochondrion, nucleus, plastid	52.26	65.05
TraesCS3D01G522600.2	Wheat	cytosol	49.78	64.67
TraesCS3B01G581600.2	Wheat	cytosol	52.08	64.47
EES18851	Sorghum	cytosol, plastid	52.26	64.41
Zm00001d006773_P001	Maize	cytosol	22.85	64.02
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	51.99	64.01
Os05t0106700-00	Rice	mitochondrion	52.35	62.87
Os04t0686200-01	Rice	plasma membrane	56.95	60.83
GSMUA_AchrUn_...	Banana	nucleus	61.29	60.02
EES13137	Sorghum	cytosol	56.24	59.68
Zm00001d002876_P001	Maize	mitochondrion	56.16	58.33
TraesCS2A01G581400.1	Wheat	cytosol	55.0	58.04
TraesCS2B01G609200.1	Wheat	cytosol	54.83	57.85
VIT_05s0049g01140.t01	Wine grape	cytosol	54.21	57.68
TraesCS2D01G589800.1	Wheat	cytosol	54.65	57.66
HORVU2Hr1G124270.22	Barley	cytosol, mitochondrion, nucleus	54.92	57.62
HORVU3Hr1G108180.1	Barley	mitochondrion	8.15	55.09
VIT_06s0009g03550.t01	Wine grape	nucleus	52.79	53.84
VIT_12s0057g00540.t01	Wine grape	cytosol, mitochondrion	8.68	52.69
VIT_13s0067g03380.t01	Wine grape	endoplasmic reticulum, extracellular	50.4	51.82
VIT_01s0026g02170.t01	Wine grape	cytosol	41.01	50.99
VIT_17s0000g05980.t01	Wine grape	endoplasmic reticulum	28.43	46.45
VIT_04s0079g00290.t01	Wine grape	cytosol	35.43	39.8
VIT_07s0031g02560.t01	Wine grape	cytosol	13.46	34.16
VIT_01s0026g01520.t01	Wine grape	cytosol	10.72	30.56
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	8.41	28.88
VIT_19s0014g03080.t01	Wine grape	cytosol	12.13	27.85
VIT_14s0006g03240.t01	Wine grape	cytosol	9.57	27.34
VIT_07s0031g02850.t01	Wine grape	mitochondrion	10.1	27.14
VIT_01s0137g00230.t01	Wine grape	cytosol	11.96	25.28
VIT_14s0083g01020.t01	Wine grape	cytosol	10.54	24.9

Protein Annotations

EntrezGene:100246114	wikigene:100246114	Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1
InterPro:BRX_N	InterPro:Brevis_radix_dom	ProteinID:CCB58954	ProteinID:CCB58954.1	ncoils:Coil	UniProt:F6HW90
EMBL:FN596264	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR001849
InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	EntrezGene:LOC100246114
wikigene:LOC100246114	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	PFAM:PF16457
InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178
PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF91	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064
SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	TIGR:TC53155	TIGR:TC53626	UniParc:UPI000198599E
ArrayExpress:VIT_18s0166g00210	EnsemblPlantsGene:VIT_18s0166g00210	EnsemblPlants:VIT_18s0166g00210.t01	unigene:Vvi.5582	RefSeq:XP_002264093	RefSeq:XP_002264093.1
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr18:-:14160272..14171887

Molecular Weight (calculated)

122289.0 Da

IEP (calculated)

8.311

GRAVY (calculated)

-0.429

Length

1129 amino acids

Sequence
(BLAST)

0001: MADLVSYGNA ERDVEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDESSL IWISSSGERI LKLASVSRII PGQRTAVFQR YLRPEKDYLS FSLIYNNGKR
0101: SLDLICKDKV EAEVWIAGLK ALISSGQGGR SKIDGWSDGG LYFDDSKDLT SNSPSDSSVS ATRDISSPEV SVGFNSNTSP NSYRPENSVP PERSHVALDH
0201: TNMQTKGSGS DAFRVSVSSA PSTSSHGSAP DDCDALGDVY IWGEVICDNL VKVGADKNAN YLTTRADLLL PKPLESNVVL DVHHIACGVR HAALVTRQGE
0301: IFTWGEESGG RLGHGVGRDV IQPRLVESLA FTSVDFVACG EFHTCAVTMA GELFTWGDGT HNAGLLGHGT DVSHWIPKRI SGPLEGLQVA SVTCGPWHTA
0401: LVTTTRQLFT FGDGTFGVLG HGDKDNVAYP REVESLSGLR TIAVACGVWH TAAVVEVIVT QSSASVSSGK LFTWGDGDKN RLGHGDKEPR LKPTCVPALI
0501: EYNFQKVACG HSLTVGLTTS GQVCTMGSTV YGQLGNPQSD GKLPCFVEDK LLGECVEEIA CGAYHVAVLT SRNEVYTWGK GANGRLGHGD IEDRKTPTLV
0601: ETLKDRHVKY IACGSNYTAA ICLHKWVSGA EQSQCSTCRQ AFGFTRKRHN CYNCGLVHCH SCSSRKALRA ALAPNPGKPY RVCDSCYTKL NKVLEAAANN
0701: RRTTVPRLSG ENKDRLDKAE IRLSKSAMPS NLDLIKQLDS KAAKQGKKAD TFSLVRPSQA PLLQLKDVVL FSAVDLRRTV PRPILTPSGV SSRSVSPFSR
0801: KPSPPRSATP VPTTSGLSFS KSIADSLKKT NELLNQEVLK LRGQVESLRE RCELQELELQ KSAKKVQEAM VVATEESAKS KAAKEVIKSL TAQLKDMAER
0901: LPPGVYDAEC MRPAYLLNGL EPNGIHYPDS NGERHSRSDS INGSCLASPT GTYSAVINGT QGSTQLMRDP LGTNEANPYQ QNLGLLTSNV RDENPDIGMP
1001: NGGGGVRTSS SSVSEAVGCK DSGPLQDGEG GTKSRNSTLS DNSQVEAEWI EQYEPGVYIT LVALRDGTRD LKRVRFSRRR FGEHQAENWW SENREKVYER
1101: YNVRGSDKSS VSGQAARRSE GGTSPSSRL

Best Arabidopsis Sequence Match ( AT5G42140.1 )
(BLAST)

0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.