Factsheet for VIT_03s0017g02290.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g042980.2.1	Tomato	cytosol	55.32	74.9
GSMUA_Achr8P06920_001	Banana	cytosol	64.13	64.53
HORVU5Hr1G089510.1	Barley	cytosol	58.66	53.61
KRH46563	Soybean	mitochondrion	69.0	51.13
Bra013002.1-P	Field mustard	mitochondrion	66.87	49.66
CDY02190	Canola	mitochondrion	66.87	49.66
CDY51633	Canola	mitochondrion	66.57	49.32
AT5G60870.2	Thale cress	mitochondrion	65.35	47.57
EER97183	Sorghum	mitochondrion	61.4	46.76
Zm00001d021372_P001	Maize	mitochondrion	61.09	46.53
TraesCS5B01G366300.1	Wheat	mitochondrion	61.4	46.12
TraesCS5D01G373300.1	Wheat	mitochondrion	61.4	46.12
Os09t0560450-01	Rice	mitochondrion	61.09	46.0
TraesCS5A01G364400.2	Wheat	mitochondrion	60.18	45.21
Os04t0226400-01	Rice	plastid	23.4	35.48
Solyc07g042970.2.1	Tomato	mitochondrion	15.5	21.16
VIT_14s0006g03240.t01	Wine grape	cytosol	19.76	16.46
VIT_07s0031g02560.t01	Wine grape	cytosol	20.97	15.51
VIT_01s0026g01520.t01	Wine grape	cytosol	18.54	15.4
VIT_07s0031g02850.t01	Wine grape	mitochondrion	18.54	14.52
VIT_14s0083g01020.t01	Wine grape	cytosol	18.24	12.55
VIT_12s0057g00540.t01	Wine grape	cytosol, mitochondrion	6.38	11.29
VIT_19s0014g03080.t01	Wine grape	cytosol	16.11	10.77
VIT_01s0026g02170.t01	Wine grape	cytosol	26.75	9.69
VIT_01s0137g00230.t01	Wine grape	cytosol	15.5	9.55
VIT_05s0049g01140.t01	Wine grape	cytosol	27.36	8.48
VIT_18s0166g00210.t01	Wine grape	cytosol	28.88	8.41
VIT_06s0009g03550.t01	Wine grape	nucleus	27.96	8.31
VIT_17s0000g05980.t01	Wine grape	endoplasmic reticulum	17.33	8.25
VIT_13s0067g03380.t01	Wine grape	endoplasmic reticulum, extracellular	25.84	7.74
VIT_04s0079g00290.t01	Wine grape	cytosol	20.06	6.57

Protein Annotations

MapMan:16.12.2.2.2	Gene3D:2.130.10.30	ProteinID:CBI34146	ProteinID:CBI34146.3	UniProt:D7TUH1	EMBL:FN596248
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000408	InterPro:IPR009091	PFAM:PF00415
PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF324	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SUPFAM:SSF50985	TMHMM:TMhelix	UniParc:UPI0001BE41BE	ArrayExpress:VIT_03s0017g02290	EnsemblPlantsGene:VIT_03s0017g02290
EnsemblPlants:VIT_03s0017g02290.t01	RefSeq:XP_002264236	RefSeq:XP_002264236.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:19077182..19089102

Molecular Weight (calculated)

35175.5 Da

IEP (calculated)

7.802

GRAVY (calculated)

0.089

Length

329 amino acids

Sequence
(BLAST)

001: MASCGFGAKA MVDAWALVRS TLLFCLRLIP IWIQFVLLLL VAFIRWLSAR LAKFSHVCRG YGGFGALGHS VYHRELLPRM VEGSWNAKIR HIATAGTHTA
101: AITESGELYT WGRDQGDGRL GLGPNCGPNE GGGLSIPSKV KALPVPVAAV SCGGFFTMVL TQEGQLWNWG ANSNYELGRG DKVGGWKPQP IPSLQDVRII
201: QIASGGYHSL ALTDDGKVLS WGYGQHGQLG HSSIENQKIP TVIEALADEH VIYIACGGSS SAAITDNGKL YMWGNAKDSQ LGVPGLPETQ PLPVEVKFLM
301: EDDRLGPHNV LSVAVGASHA MCLVSRSGC

Best Arabidopsis Sequence Match ( AT5G60870.3 )
(BLAST)

001: MYSLVVRGYG GFGALGHKVY TRELVPRRVD DSWDCKISAI ATSGTHTAAI TESGELYMWG REEGDGRLGL GPGRGPNEGG GLSVPSKVKA LTVPVASVSC
101: GGFFTMALTK EGQLWNWGAN SNYELGRGDN LGGWEPMPVP SLEGVRITQI ACGGYHSLAL TEEGKVLSWG HGGHGQLGSS SLRNQKVPTE IEALADKKIV
201: FIASGGSSSA AITDGGELWM WGNAKDFQLG VPGLPEIQTT PVEVNFLTEE DECQPHKVIS ISIGASHALC LVSRSP

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:TAIR;Acc:AT5G60870]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.