Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G089510.1 | Barley | cytosol | 74.31 | 67.5 |
| Solyc07g042980.2.1 | Tomato | cytosol | 49.85 | 67.08 |
| VIT_03s0017g02290.t01 | Wine grape | endoplasmic reticulum, golgi | 64.53 | 64.13 |
| Zm00001d021372_P001 | Maize | mitochondrion | 75.84 | 57.41 |
| EER97183 | Sorghum | mitochondrion | 75.54 | 57.18 |
| Os09t0560450-01 | Rice | mitochondrion | 76.15 | 56.98 |
| TraesCS5D01G373300.1 | Wheat | mitochondrion | 74.01 | 55.25 |
| TraesCS5B01G366300.1 | Wheat | mitochondrion | 74.01 | 55.25 |
| TraesCS5A01G364400.2 | Wheat | mitochondrion | 74.01 | 55.25 |
| KRH46563 | Soybean | mitochondrion | 71.25 | 52.48 |
| CDY51633 | Canola | mitochondrion | 67.89 | 50.0 |
| Bra013002.1-P | Field mustard | mitochondrion | 67.58 | 49.89 |
| CDY02190 | Canola | mitochondrion | 67.58 | 49.89 |
| AT5G60870.2 | Thale cress | mitochondrion | 67.58 | 48.89 |
| Os04t0226400-01 | Rice | plastid | 31.19 | 47.0 |
| Solyc07g042970.2.1 | Tomato | mitochondrion | 23.24 | 31.54 |
| GSMUA_Achr9P15560_001 | Banana | cytosol | 22.02 | 19.35 |
| GSMUA_Achr3P19000_001 | Banana | nucleus | 25.99 | 18.93 |
| GSMUA_Achr6P17690_001 | Banana | cytosol | 25.08 | 18.68 |
| GSMUA_Achr10P... | Banana | mitochondrion | 21.41 | 16.67 |
| GSMUA_Achr6P29750_001 | Banana | cytosol | 19.27 | 15.87 |
| GSMUA_Achr10P... | Banana | cytosol | 20.18 | 13.66 |
| GSMUA_Achr5P12060_001 | Banana | mitochondrion | 17.74 | 12.83 |
| GSMUA_Achr1P00100_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 18.04 | 11.99 |
| GSMUA_Achr9P02110_001 | Banana | plastid | 19.57 | 11.9 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 19.27 | 11.73 |
| GSMUA_AchrUn_... | Banana | cytosol | 18.65 | 11.44 |
| GSMUA_Achr2P10610_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 17.13 | 11.38 |
| GSMUA_Achr8P00080_001 | Banana | endoplasmic reticulum | 29.66 | 10.37 |
| GSMUA_Achr8P07850_001 | Banana | cytosol | 31.19 | 9.23 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.42 | 9.19 |
| GSMUA_Achr5P08220_001 | Banana | cytosol | 29.97 | 8.91 |
| GSMUA_Achr6P13030_001 | Banana | endoplasmic reticulum | 26.61 | 8.89 |
| GSMUA_Achr2P20470_001 | Banana | endoplasmic reticulum, plasma membrane | 26.61 | 8.81 |
| GSMUA_Achr4P00510_001 | Banana | cytosol | 25.69 | 8.74 |
| GSMUA_Achr1P02140_001 | Banana | cytosol | 23.55 | 8.62 |
| GSMUA_Achr5P11650_001 | Banana | cytosol | 25.08 | 8.45 |
| GSMUA_Achr7P20980_001 | Banana | cytosol | 25.69 | 5.78 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P06920_001 | EnsemblPlants:GSMUA_Achr8T06920_001 | EnsemblPlantsGene:GSMUA_Achr8G06920_001 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 |
| InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF303 | PFAM:PF00415 | PFscan:PS50012 |
| PRINTS:PR00633 | ScanProsite:PS00626 | SEG:seg | SUPFAM:SSF50985 | UniParc:UPI0002961F7B | UniProt:M0TN95 |
| MapMan:16.12.2.2.2 | : | : | : | : | : |
Description
Putative E3 ubiquitin-protein ligase HERC2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G06920_001]
Coordinates
chr8:+:4492455..4497276
Molecular Weight (calculated)
34375.7 Da
IEP (calculated)
6.889
GRAVY (calculated)
-0.137
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MWGKGDGGRL GFGDENTVFV PTLNPNLEGV RSIALGGIHS TSLTRSGEVF TWGYGGFGAL GHSVYHRELL PRAVKGSWEE NITHLATSGA HTAAITETGQ
101: LFTWGRDQGD GRLGLGSGGG PGEAGSFSIP SKVNALPVPV TAVSCGGFFT MALTSDGQIW SWGANSNYEL GRGNNVSDWR PQTIPSLKDT RIIQIASGGY
201: HSLALTDTGK VLSWGHGGHG QLGHPSVQNQ KVPLGIEALA QEHVVHIASG GSTSAAVTDK GKLYMWGNAR DCQLGVPGLP EFQKLPVEVK FLMEDEDLGP
301: HHVISVAVGA SHAMCLVLRQ NAPLAKL
101: LFTWGRDQGD GRLGLGSGGG PGEAGSFSIP SKVNALPVPV TAVSCGGFFT MALTSDGQIW SWGANSNYEL GRGNNVSDWR PQTIPSLKDT RIIQIASGGY
201: HSLALTDTGK VLSWGHGGHG QLGHPSVQNQ KVPLGIEALA QEHVVHIASG GSTSAAVTDK GKLYMWGNAR DCQLGVPGLP EFQKLPVEVK FLMEDEDLGP
301: HHVISVAVGA SHAMCLVLRQ NAPLAKL
001: MAALSHRLRS FTRRFSSTRT TQRSGGGANT KVPILYTSPD IDSDPVTLQL FSWGRGASGQ LGGGIEEIRM YPSPVANLLF RSDQSFSLAQ TPGRIDADSS
101: SFRIGISCGL FHSGLTIDGD LWIWGKGDGG RLGFGQENSV FVPNLNPLFE EHSIRCIALG GLHSVALTHQ GDVFTWGYGG FGALGHKVYT RELVPRRVDD
201: SWDCKISAIA TSGTHTAAIT ESGELYMWGR EEGDGRLGLG PGRGPNEGGG LSVPSKVKAL TVPVASVSCG GFFTMALTKE GQLWNWGANS NYELGRGDNL
301: GGWEPMPVPS LEGVRITQIA CGGYHSLALT EEGKVLSWGH GGHGQLGSSS LRNQKVPTEI EALADKKIVF IASGGSSSAA ITDGGELWMW GNAKDFQLGV
401: PGLPEIQTTP VEVNFLTEED ECQPHKVISI SIGASHALCL VSRSP
101: SFRIGISCGL FHSGLTIDGD LWIWGKGDGG RLGFGQENSV FVPNLNPLFE EHSIRCIALG GLHSVALTHQ GDVFTWGYGG FGALGHKVYT RELVPRRVDD
201: SWDCKISAIA TSGTHTAAIT ESGELYMWGR EEGDGRLGLG PGRGPNEGGG LSVPSKVKAL TVPVASVSCG GFFTMALTKE GQLWNWGANS NYELGRGDNL
301: GGWEPMPVPS LEGVRITQIA CGGYHSLALT EEGKVLSWGH GGHGQLGSSS LRNQKVPTEI EALADKKIVF IASGGSSSAA ITDGGELWMW GNAKDFQLGV
401: PGLPEIQTTP VEVNFLTEED ECQPHKVISI SIGASHALCL VSRSP
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:TAIR;Acc:AT5G60870]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.