Factsheet for TraesCS5D01G373300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G089510.1	Barley	cytosol	81.05	98.61
TraesCS5B01G366300.1	Wheat	mitochondrion	98.4	98.4
TraesCS5A01G364400.2	Wheat	mitochondrion	97.26	97.26
Os09t0560450-01	Rice	mitochondrion	88.58	88.79
EER97183	Sorghum	mitochondrion	85.62	86.81
Zm00001d021372_P001	Maize	mitochondrion	83.56	84.72
GSMUA_Achr8P06920_001	Banana	cytosol	55.25	74.01
Solyc07g042980.2.1	Tomato	cytosol	35.39	63.79
Bra013002.1-P	Field mustard	mitochondrion	63.01	62.3
CDY02190	Canola	mitochondrion	63.01	62.3
KRH46563	Soybean	mitochondrion	62.56	61.71
CDY51633	Canola	mitochondrion	62.33	61.49
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	46.12	61.4
AT5G60870.2	Thale cress	mitochondrion	60.73	58.85
Os04t0226400-01	Rice	plastid	28.31	57.14
Solyc07g042970.2.1	Tomato	mitochondrion	29.22	53.11
TraesCS2D01G304900.2	Wheat	cytosol	24.2	23.93
TraesCS7D01G282600.1	Wheat	cytosol	20.55	23.87
TraesCS6D01G142500.1	Wheat	golgi	23.74	23.64
TraesCS1D01G078800.1	Wheat	mitochondrion	19.18	20.05
TraesCS3D01G312300.1	Wheat	cytosol	18.26	19.66
TraesCS5D01G177900.1	Wheat	cytosol	19.63	17.92
TraesCS2D01G241400.2	Wheat	cytosol	19.41	17.56
TraesCS2D01G340500.1	Wheat	cytosol	16.21	16.21
TraesCS5D01G123500.1	Wheat	mitochondrion, plastid	7.31	14.35
TraesCS3D01G522600.2	Wheat	cytosol	25.57	12.89
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	26.48	12.76
TraesCS2D01G457000.1	Wheat	cytosol, nucleus, peroxisome	29.45	12.61
TraesCS2D01G589800.1	Wheat	cytosol	29.22	11.96
TraesCS3D01G489600.1	Wheat	cytosol	29.68	11.94
TraesCS1D01G240700.1	Wheat	cytosol	29.68	11.89
TraesCS1D01G372300.1	Wheat	cytosol	27.4	11.4
TraesCS7D01G187100.3	Wheat	cytosol	26.48	11.36
TraesCS6D01G241800.1	Wheat	cytosol	24.89	10.27

Protein Annotations

EnsemblPlants:TraesCS5D01G373300.1	EnsemblPlantsGene:TraesCS5D01G373300	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PANTHER:PTHR11254	PANTHER:PTHR11254:SF409	PFAM:PF00415	PFscan:PS50012	PRINTS:PR00633
ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	MapMan:16.12.2.2.2	:	:

Description

No Description!

Coordinates

chr5D:+:446759394..446763482

Molecular Weight (calculated)

45360.1 Da

IEP (calculated)

7.604

GRAVY (calculated)

-0.007

Length

438 amino acids

Sequence
(BLAST)

001: MLRRLLPLRR RCYSASSTSS AAAPTLYSGG DHPVSLLSWG RGASGQLGGG KEERRLYPAP VARLLLPVPS PVLPPTPGRL PPAAGTEAAG GVEVGISCGL
101: FHSALLVDGA AWVWGKGDGG RLGLGDEASA FVPRANPNLA GLRVLALGGI HSAALTASGD VFTWGYGGFG ALGHYVYHRE LLPRKVNGPW GGKIVHIATS
201: GAHTAAITES GCELYTWGRD EGDGRLGLGS GGGPGEAGSL SVPSKVTALP VPVAAVACGG FFTLALTSDG QLWSWGANSN FELGRGSNSS DWRPQIVPSL
301: KNVHVIQVAC GGYHSLALTD EGEVLSWGHG GHGQLGHPTI QNHRIPLAIK ALSEERIVYI ACGGSTSAAI SEKGDLYMWG NARDCQLGVP DLPEVQPLPV
401: KVNFLADGDE DPSPPRVISV AIGASHAMCL VSRQQIQK

Best Arabidopsis Sequence Match ( AT5G60870.1 )
(BLAST)

001: MAALSHRLRS FTRRFSSTRT TQRSGGGANT KVPILYTSPD IDSDPVTLQL FSWGRGASGQ LGGGIEEIRM YPSPVANLLF RSDQSFSLAQ TPGRIDADSS
101: SFRIGISCGL FHSGLTIDGD LWIWGKGDGG RLGFGQENSV FVPNLNPLFE EHSIRCIALG GLHSVALTHQ GDVFTWGYGG FGALGHKVYT RELVPRRVDD
201: SWDCKISAIA TSGTHTAAIT ESGELYMWGR EEGDGRLGLG PGRGPNEGGG LSVPSKVKAL TVPVASVSCG GFFTMALTKE GQLWNWGANS NYELGRGDNL
301: GGWEPMPVPS LEGVRITQIA CGGYHSLALT EEGKVLSWGH GGHGQLGSSS LRNQKVPTEI EALADKKIVF IASGGSSSAA ITDGGELWMW GNAKDFQLGV
401: PGLPEIQTTP VEVNFLTEED ECQPHKVISI SIGASHALCL VSRSP

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:TAIR;Acc:AT5G60870]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.