CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021372_P001	Maize	mitochondrion	94.91	94.91
HORVU5Hr1G089510.1	Barley	cytosol	74.07	88.89
Os09t0560450-01	Rice	mitochondrion	88.43	87.41
TraesCS5D01G373300.1	Wheat	mitochondrion	86.81	85.62
TraesCS5B01G366300.1	Wheat	mitochondrion	86.34	85.16
TraesCS5A01G364400.2	Wheat	mitochondrion	84.95	83.79
GSMUA_Achr8P06920_001	Banana	cytosol	57.18	75.54
Solyc07g042980.2.1	Tomato	cytosol	36.11	64.2
Bra013002.1-P	Field mustard	mitochondrion	64.58	62.98
CDY02190	Canola	mitochondrion	64.58	62.98
CDY51633	Canola	mitochondrion	63.89	62.16
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	46.76	61.4
KRH46563	Soybean	mitochondrion	62.73	61.04
AT5G60870.2	Thale cress	mitochondrion	62.04	59.29
Os04t0226400-01	Rice	plastid	28.47	56.68
Solyc07g042970.2.1	Tomato	mitochondrion	28.7	51.45
EES10837	Sorghum	cytosol	24.31	23.7
KXG25196	Sorghum	cytosol	21.3	23.53
OQU87663	Sorghum	cytosol	19.91	21.29
EES09892	Sorghum	mitochondrion	19.44	20.1
OQU91404	Sorghum	cytosol	19.68	17.56
KXG35074	Sorghum	cytosol	18.75	16.77
KXG26580	Sorghum	cytosol	20.14	16.2
EES12399	Sorghum	cytosol, plastid	19.21	15.69
EES07101	Sorghum	cytosol, plastid	19.21	15.51
KXG34127	Sorghum	cytosol	29.86	13.99
KXG34192	Sorghum	cytosol	27.78	13.16
EES18851	Sorghum	cytosol, plastid	27.31	12.88
EES13137	Sorghum	cytosol	30.32	12.31
EES19890	Sorghum	cytosol	27.31	11.57
EES01332	Sorghum	cytosol	26.62	10.89
KXG26989	Sorghum	cytosol	26.85	10.87
OQU85620	Sorghum	cytosol, mitochondrion, nucleus	24.07	9.69

Protein Annotations

MapMan:16.12.2.2.2	Gene3D:2.130.10.30	EntrezGene:8077264	UniProt:C5X8E0	ncoils:Coil	EnsemblPlants:EER97183
ProteinID:EER97183	ProteinID:EER97183.1	GO:GO:0003674	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009628	GO:GO:0009881	GO:GO:0009987
GO:GO:0010224	GO:GO:0038023	GO:GO:0042803	InterPro:IPR000408	InterPro:IPR009091	PFAM:PF00415
PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF317	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	EnsemblPlantsGene:SORBI_3002G296400	SUPFAM:SSF50985	UniParc:UPI0001A83AD8	InterPro:UVR8	RefSeq:XP_002460662.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:67326919..67330226

Molecular Weight (calculated)

45461.8 Da

IEP (calculated)

6.831

GRAVY (calculated)

-0.135

Length

432 amino acids

Sequence
(BLAST)

001: MFRRLLPHRS HFSTSSASNS TPTLYSEGTI PFSLLSWGRG ASGQLGGGKE ERRLYPSPVA HLLLPESDPR LAPTPGRLPS AGETSGVEVG ISCGLFHSAL
101: LVEGSVWVWG KGDGGRLGLG DESSAFVPRP NPNLRDLRLL ALGGIHSAAL TTSGDVFTWG YGGFGALGHY VYHRELLPRQ VNGPWEGKIT HISTSGAHTA
201: AITDSGELYT WGRDEGDGRL GLGSGGGPGE AGSLSVPSKV NALPVPVAAV ACGGFFTMAL TSDGQLWSWG ANSNFELGRG SNFSDWRPQL VPSLKSIRVI
301: QVACGGYHSL ALTDEGEVLS WGHGGHGQLG HPTLQNHRIP LAIKALSDER IVHIACGGST SAAISEKGDL YMWGNARDCQ LGVPGLPEVQ PLPVKVNFLR
401: DGDEDLGPSR VISVAIGASH AMCLVSMQQT EK

Best Arabidopsis Sequence Match ( AT5G60870.1 )
(BLAST)

001: MAALSHRLRS FTRRFSSTRT TQRSGGGANT KVPILYTSPD IDSDPVTLQL FSWGRGASGQ LGGGIEEIRM YPSPVANLLF RSDQSFSLAQ TPGRIDADSS
101: SFRIGISCGL FHSGLTIDGD LWIWGKGDGG RLGFGQENSV FVPNLNPLFE EHSIRCIALG GLHSVALTHQ GDVFTWGYGG FGALGHKVYT RELVPRRVDD
201: SWDCKISAIA TSGTHTAAIT ESGELYMWGR EEGDGRLGLG PGRGPNEGGG LSVPSKVKAL TVPVASVSCG GFFTMALTKE GQLWNWGANS NYELGRGDNL
301: GGWEPMPVPS LEGVRITQIA CGGYHSLALT EEGKVLSWGH GGHGQLGSSS LRNQKVPTEI EALADKKIVF IASGGSSSAA ITDGGELWMW GNAKDFQLGV
401: PGLPEIQTTP VEVNFLTEED ECQPHKVISI SIGASHALCL VSRSP

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:TAIR;Acc:AT5G60870]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.