CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050985_P002	Maize	cytosol	90.28	86.87
Os02t0597000-01	Rice	cytosol	78.13	77.84
EES12399	Sorghum	cytosol, plastid	56.26	56.9
KXG26580	Sorghum	cytosol	54.95	54.75
GSMUA_AchrUn_...	Banana	cytosol	49.35	49.53
KXG35074	Sorghum	cytosol	22.06	24.43
KXG25196	Sorghum	cytosol	17.76	24.3
EES10837	Sorghum	cytosol	18.69	22.57
EES09892	Sorghum	mitochondrion	16.45	21.05
EER97183	Sorghum	mitochondrion	15.51	19.21
OQU91404	Sorghum	cytosol	17.2	19.01
OQU87663	Sorghum	cytosol	14.21	18.81
EES19890	Sorghum	cytosol	24.11	12.65
EES01332	Sorghum	cytosol	23.55	11.93
KXG34127	Sorghum	cytosol	20.0	11.61
EES18851	Sorghum	cytosol, plastid	19.44	11.35
EES13137	Sorghum	cytosol	22.43	11.28
KXG34192	Sorghum	cytosol	18.69	10.96
OQU85620	Sorghum	cytosol, mitochondrion, nucleus	20.75	10.34
KXG26989	Sorghum	cytosol	20.56	10.31

Protein Annotations

Gene3D:2.130.10.30	MapMan:35.1	EntrezGene:8056483	UniProt:C5XX40	EnsemblPlants:EES07101	ProteinID:EES07101
ProteinID:EES07101.1	InterPro:IPR000408	InterPro:IPR009091	ProteinID:OQU85249.1	PFAM:PF00415	PRINTS:PR00633
ScanProsite:PS00626	PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF198	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens
EnsemblPlantsGene:SORBI_3004G203600	SUPFAM:SSF50985	unigene:Sbi.1674	UniParc:UPI0001A85DED	RefSeq:XP_002454125.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:55523458..55527368

Molecular Weight (calculated)

57404.3 Da

IEP (calculated)

5.962

GRAVY (calculated)

-0.068

Length

535 amino acids

Sequence
(BLAST)

001: MQCPMDTAAS GTSPVLQFHS NADESTSHSS PLPTLIERSQ RHCCGDGIPG EFPLAVSPSI VLHVLSACDL DPKDLANLEA TCTFFSKPAN FAPNFALSLP
101: ELAAFDMCQK RTMFKLMKQE DQECLKQRCG GSWKHVLKYI LVREKNGSRV IAGPGHSIVI SSNGDVYSFG ANCSGQLGLG DSEDRFRPCI IRSLQGIRIT
201: QAAVGSRWTM LVSDTGSVYA FGKDNFRGAE VVDDAHIQIT TPKIVESLKG VFVVQAAIGG YFSAVLSREG RVYTFSWGKE ERLGHSSDPS DVEPRLLSGL
301: EDVPVAYISA GNCYLLMLAY QPNGMSVYSV GCGLGGKLGH GCKTNKGMPK LIEQFQSLSF KPVSIAAGTW HAAALGADGR VCTWGWGHTG CLGHGDEEYK
401: AVPTLVEGLR DVKAVHLSTG EYTTFVVAEN GDVYSFGSGE SLVFQEDDEA EEGPDFSTPS IVSSLKALNK KVVQISPTNA SYWLNSEMGH PHTFAVMDSG
501: DLCAFGGGIR GQLGVKLLEG VEKVSVPMHV PIVLN

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.