CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	96.72	96.62
HORVU1Hr1G002740.1	Barley	cytosol, mitochondrion, nucleus, plastid	84.06	84.9
TraesCS1A01G020400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	83.84	84.67
TraesCS1B01G024400.1	Wheat	cytosol, mitochondrion, nucleus	83.62	84.45
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	83.62	84.27
Os05t0106700-00	Rice	mitochondrion	82.42	80.32
KXG34192	Sorghum	cytosol	77.51	77.85
KRH08736	Soybean	endoplasmic reticulum	44.98	59.11
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	58.95	55.16
CDY48550	Canola	cytosol	56.88	53.16
KRG91629	Soybean	cytosol	63.32	52.82
VIT_18s0166g00210.t01	Wine grape	cytosol	64.41	52.26
KRH30227	Soybean	cytosol	25.55	51.88
KRH35179	Soybean	cytosol	63.43	51.88
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	55.68	51.67
Solyc04g071040.2.1	Tomato	cytosol	62.88	51.15
PGSC0003DMT400002081	Potato	cytosol	62.88	51.15
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	59.17	50.28
KRH70333	Soybean	cytosol	61.03	49.91
CDY47138	Canola	cytosol	56.55	49.47
Bra016214.1-P	Field mustard	cytosol	56.44	49.24
KRH08750	Soybean	cytosol	34.17	49.14
CDY11586	Canola	cytosol	56.33	49.0
AT1G76950.1	Thale cress	cytosol	58.84	48.87
Bra003698.1-P	Field mustard	mitochondrion	57.31	48.75
CDX87557	Canola	cytosol	55.9	47.72
Bra015708.1-P	Field mustard	cytosol	55.9	47.67
CDX88324	Canola	cytosol	55.02	47.5
KXG34127	Sorghum	cytosol	47.16	46.85
EES13137	Sorghum	cytosol	53.71	46.24
KRH30228	Soybean	cytosol	20.31	45.7
CDX68076	Canola	cytosol	38.43	42.41
EES19890	Sorghum	cytosol	45.31	40.69
EES01332	Sorghum	cytosol	44.32	38.45
EES10837	Sorghum	cytosol	15.07	31.15
CDY70949	Canola	cytosol	11.14	28.81
KXG25196	Sorghum	cytosol	12.01	28.13
KXG26989	Sorghum	cytosol	32.75	28.12
OQU85620	Sorghum	cytosol, mitochondrion, nucleus	32.75	27.96
EER97183	Sorghum	mitochondrion	12.88	27.31
EES09892	Sorghum	mitochondrion	12.45	27.27
OQU91404	Sorghum	cytosol	14.08	26.65
OQU87663	Sorghum	cytosol	11.24	25.5
KXG35074	Sorghum	cytosol	12.99	24.64
EES07101	Sorghum	cytosol, plastid	11.35	19.44
KXG26580	Sorghum	cytosol	11.24	19.18
EES12399	Sorghum	cytosol, plastid	11.03	19.09

Protein Annotations

Gene3D:2.130.10.30	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8068646	InterPro:BRX_N	InterPro:Brevis_radix_dom
UniProt:C5YY28	ncoils:Coil	EnsemblPlants:EES18851	ProteinID:EES18851	ProteinID:EES18851.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR009091	InterPro:IPR013083	InterPro:IPR013591
InterPro:IPR017455	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	PRINTS:PR00633
ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF199
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	EnsemblPlantsGene:SORBI_3009G005700	SUPFAM:SSF50985	SUPFAM:SSF57903
unigene:Sbi.12734	UniParc:UPI0001A88987	RefSeq:XP_002440421.1	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:511754..518321

Molecular Weight (calculated)

99304.0 Da

IEP (calculated)

8.362

GRAVY (calculated)

-0.406

Length

916 amino acids

Sequence
(BLAST)

001: MLAKGPSSDV LRASISSAPS TSSHGSAQDE CDSLGDVYVW GEVVCDTSVR TGSDTVISST GRTDILLPKP LESNLVLDVY HVDCGVKHAA LVMKNGEVFT
101: WGEDSGGRLG HGTREDCVRP RLVESLTVSN VDFVACGEFH TCAVTTTGEL YSWGDGTHNV GLLGHGNDVG HWIPKRVSGA LEGLQVAYVS CGTWHTALIT
201: SMGQLFTFGD GSFGVLGHGD LKSVSYPREV ESLSGLKTIA VACGVWHTAA IVEVIVTRSS SSVKLSAGKL FTWGDGDKHR LGHGDKETRL KPTCVATLID
301: HDFYRVACGH SLTVALTTSG QVLSMGNAVY GQLGNPHSDG RIPCLVEDKI VGEQVIQIAC GSYHVAVLTG RNEVFTWGKG ANGRLGHGDI EDRKVPTLVE
401: VLKDRAVRYI ACGANFTAAI CQYKWVSGAD QSQCSSCRQP FGFTRKRRNC YNCGLVHCNA CTSRKALRAA LAPSPGKPYR VCDSCFLKLN NASDPNAANR
501: RKDPVPYQPV ESNGDAKVGK ASLPSNMDMI RNLDIKAARQ GKKTDGLSFL RNPQVSSLLQ LSDIALSGGL GMNRSAPRAV RISAARSVTT SRAVSPFSRK
601: PSPPRSTTPV PTAHGLSLSK SATDNIVKAH ELLNQEVERL RAQVDNLRNR CELQELELQK SAKKVQEAMT LVAEESAKSK AAKEVIKSLT AQLKDMAERL
701: PPDHGAYNVN ETKQSHIPNG IESHVASYSS MNGIHQTRNE LFNASIAHSP NSGRSSHCNG ISGQHKLLGN VSEHSDCSTH SLRITSPHDS ELPNRRARSS
801: SDEMLTAGSR VDDNVSMDAM SLQSGEDGYK PRGTISLPSN QVQAEWIEQY EPGVYITLTT LRDGTRDLKR VRFSRRRFGE HQAENWWNEN REKVYERYNV
901: KSSERVSSAA STRSAY

Best Arabidopsis Sequence Match ( AT5G42140.1 )
(BLAST)

0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.