CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30228	Soybean	cytosol	47.18	41.03
HORVU3Hr1G108180.1	Barley	mitochondrion	19.21	40.72
CDX68076	Canola	cytosol	92.94	39.64
KRH08750	Soybean	cytosol	70.62	39.25
AT1G76950.1	Thale cress	cytosol	93.79	30.1
CDX88324	Canola	cytosol	86.72	28.93
CDX87557	Canola	cytosol	87.29	28.8
CDY48550	Canola	cytosol	71.75	25.92
VIT_18s0166g00210.t01	Wine grape	cytosol	76.84	24.09
PGSC0003DMT400002081	Potato	cytosol	75.71	23.8
Solyc04g071040.2.1	Tomato	cytosol	74.86	23.53
KRG91629	Soybean	cytosol	72.88	23.5
KRH35179	Soybean	cytosol	72.88	23.04
KRH70333	Soybean	cytosol	72.32	22.86
CDY66504	Canola	cytosol	52.82	22.67
CDY11586	Canola	cytosol	66.95	22.51
CDY47138	Canola	cytosol	66.38	22.45
Os01t0964800-01	Rice	mitochondrion	33.9	20.73
GSMUA_Achr8P07850_001	Banana	cytosol	63.28	20.27
EES13137	Sorghum	cytosol	57.91	19.27
Os04t0686200-01	Rice	plasma membrane	57.34	19.21
Zm00001d002876_P001	Maize	mitochondrion	57.63	18.77
GSMUA_AchrUn_...	Banana	nucleus	60.17	18.47
CDY12764	Canola	cytosol	54.52	18.42
TraesCS2A01G581400.1	Wheat	cytosol	55.08	18.22
CDX85076	Canola	cytosol	53.39	18.21
TraesCS2B01G609200.1	Wheat	cytosol	54.8	18.13
TraesCS2D01G589800.1	Wheat	cytosol	54.8	18.13
HORVU2Hr1G124270.22	Barley	cytosol, mitochondrion, nucleus	54.52	17.94
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	48.59	17.43
CDX77534	Canola	cytosol	53.11	16.92
CDX91165	Canola	nucleus	51.13	16.87
CDX69686	Canola	nucleus	50.85	16.82
CDX85690	Canola	nucleus	50.85	16.82
CDX70876	Canola	cytosol	52.82	16.77
CDY49416	Canola	cytosol	52.82	16.71
CDX92532	Canola	nucleus	52.26	16.61
CDY13998	Canola	nucleus	51.98	16.49
CDX88891	Canola	cytosol, mitochondrion, nucleus	52.54	16.39
CDX97187	Canola	nucleus	46.89	15.69
CDX77871	Canola	cytosol	41.81	15.6
CDY21795	Canola	cytosol	41.81	15.46
CDY28580	Canola	plasma membrane	44.63	15.13
CDY44086	Canola	plasma membrane, vacuole	44.92	15.11
CDY31624	Canola	cytosol	36.16	13.02
CDX87989	Canola	cytosol	35.88	12.67
CDY69131	Canola	cytosol	11.02	12.15
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	33.33	12.05
TraesCS3D01G522600.2	Wheat	cytosol	29.1	11.85
CDX97668	Canola	cytosol	15.82	11.74
CDY56827	Canola	cytosol	15.82	11.74
Zm00001d011805_P001	Maize	cytosol	30.23	11.73
HORVU3Hr1G112690.2	Barley	cytosol, plastid	29.94	11.67
KXG34192	Sorghum	cytosol	29.94	11.62
TraesCS1A01G020400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	29.38	11.47
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	29.38	11.44
TraesCS3A01G512900.1	Wheat	cytosol	29.38	11.42
CDY39843	Canola	cytosol	12.99	11.39
HORVU1Hr1G002740.1	Barley	cytosol, mitochondrion, nucleus, plastid	29.1	11.36
TraesCS1B01G024400.1	Wheat	cytosol, mitochondrion, nucleus	29.1	11.36
CDY56518	Canola	cytosol, plastid	16.67	11.35
TraesCS3B01G581600.2	Wheat	cytosol	29.1	11.29
Os05t0106700-00	Rice	mitochondrion	29.94	11.28
CDY43762	Canola	cytosol	13.56	11.21
EES18851	Sorghum	cytosol, plastid	28.81	11.14
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	28.53	11.01
CDY13609	Canola	cytosol	16.38	10.96
CDY28863	Canola	cytosol	16.1	10.96
CDY60046	Canola	cytosol	13.84	10.94
CDX81201	Canola	cytosol	13.56	10.91
CDX83586	Canola	cytosol, plastid	16.1	10.78
CDX84451	Canola	cytosol	13.56	10.76
CDY01845	Canola	plastid	15.54	10.64
CDX96062	Canola	plastid	15.54	10.62
CDX99731	Canola	cytosol, plastid	15.82	10.47
CDY40988	Canola	cytosol, plastid	16.1	10.38
CDY31347	Canola	cytosol	12.71	10.32
CDY46423	Canola	cytosol	11.02	10.29
CDY39172	Canola	cytosol	14.12	10.16
CDY04192	Canola	cytosol	14.12	10.16
CDY16215	Canola	cytosol	10.73	9.84
CDY44785	Canola	mitochondrion	11.3	9.24
CDY02190	Canola	mitochondrion	11.3	9.03
CDY57523	Canola	cytosol	11.86	8.92
CDY43240	Canola	cytosol	11.86	8.9
CDX69479	Canola	cytosol	9.89	8.82
CDY26488	Canola	cytosol	9.89	8.79
CDY51633	Canola	mitochondrion	11.02	8.78
CDY40735	Canola	mitochondrion	10.73	8.7
CDY20113	Canola	endoplasmic reticulum, extracellular	16.38	7.03
CDY21840	Canola	endoplasmic reticulum, extracellular	16.38	7.02
CDY14709	Canola	nucleus	12.43	6.37
CDY34733	Canola	cytosol	5.65	5.97
KRH30227	Soybean	cytosol	1.98	1.55
Zm00001d006773_P001	Maize	cytosol	1.69	1.49
CDX87986	Canola	cytosol	0.0	0.0
KRH08736	Soybean	endoplasmic reticulum	0.0	0.0

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	MapMan:35.1	UniProt:A0A078JW11	EnsemblPlants:CDY70949	ProteinID:CDY70949
ProteinID:CDY70949.1	EnsemblPlantsGene:GSBRNA2T00008765001	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993
PFAM:PF00415	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain	ScanProsite:PS00626	PFscan:PS50012
PANTHER:PTHR22870	PANTHER:PTHR22870:SF91	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SUPFAM:SSF50729	SUPFAM:SSF50985
UniParc:UPI0004EE8BB6	SEG:seg	:	:	:	:

Description

BnaC06g43200DBnaC06g43200D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JW11]

Coordinates

chrLK043876:-:3..2388

Molecular Weight (calculated)

38074.7 Da

IEP (calculated)

7.880

GRAVY (calculated)

-0.338

Length

354 amino acids

Sequence
(BLAST)

001: MADLVSYSNA ADHNLEQALN TLKKGTQLLK YGRKGKPKFY PFRLSSDEKS LIWISSSGEK RLKLASVSKI VPGQRTAVFQ RYLRPEKDYL SFSLLYNGKK
101: KSLDLICKDK VEAEVWIGGL KTLISGGQGG RSKIDGWSGG NISVDASRDV TSSSQSSSSA SASQGHSSPG TPFNFDPVPS PKSTEPEKSH VALDTKMMQT
201: KVSGSDGFRV SVSSAQSSSS HGSGADDSDA LGDVYIWGEV ICDNVVKVGI DKNASYLTTR TDVLVPKPLE SNIVLDVHQI ACGVRHAAFV TRQGEVFTWG
301: EESGGRLGHG IGKDVFHPRL VESLTACDFV ACGEFHTCAV TLSGELYTWG DGTH

Best Arabidopsis Sequence Match ( AT1G76950.1 )
(BLAST)

0001: MADLVTYSNA DHNLEQALIT LKKGTQLLKY GRKGKPKFYP FRLSSDEKSL IWISSSGEKR LKLASVSKIV PGQRTAVFQR YLRPEKDYLS FSLLYNGKKK
0101: SLDLICKDKV EAEIWIGGLK TLISTGQGGR SKIDGWSGGG LSVDASRELT SSSPSSSSAS ASRGHSSPGT PFNIDPITSP KSAEPEVPPT DSEKSHVALD
0201: NKNMQTKVSG SDGFRVSVSS AQSSSSHGSA ADDSDALGDV YIWGEVICDN VVKVGIDKNA SYLTTRTDVL VPKPLESNIV LDVHQIACGV RHAAFVTRQG
0301: EIFTWGEESG GRLGHGIGKD VFHPRLVESL TATSSVDFVA CGEFHTCAVT LAGELYTWGD GTHNVGLLGH GSDISHWIPK RIAGSLEGLH VASVSCGPWH
0401: TALITSYGRL FTFGDGTFGV LGHGDKETVQ YPREVESLSG LRTIAVSCGV WHTAAVVEII VTQSNSSSVS SGKLFTWGDG DKNRLGHGDK DPRLKPTCVP
0501: ALIDYNFHKI ACGHSLTVGL TTSGQVFTMG STVYGQLGNL QTDGKLPCLV EDKLASEFVE EISCGAYHVA ALTSRNEVYT WGKGANGRLG HGDLEDRKVP
0601: TIVEALKDRH VKYIACGSNY TAAICLHKWV SGAEQSQCST CRLAFGFTRK RHNCYNCGLV HCHSCSSKKA FRAALAPSAG RLYRVCDSCY VKLSKVSEIN
0701: DTNRRNSAVP RLSGENRDRL DKSEIRLAKF GTSNMDLIKQ LDSKAAKQGK KTDTFSLGRN SQLPSLLQLK DAVQSNIGDM RRATPKLAQA PSGISSRSVS
0801: PFSRRSSPPR SATPMPSTSG LYFPVGIADN MKKTNEILNQ EIVKLRTQVD SLTQKCEFQE VELQNSVKKT QEALALAEEE SAKSRAAKEA IKSLIAQLKD
0901: VAEKLPPGES VKLACLQNGL DQNGFHFPEE NGFHPSRSES MTSSISSVAP FDFAFANASW SNLQSPKQTP RASERNSNAY PADPRLSSSG SVISERIEPF
1001: QFQNNSDNGS SQTGVNNTNQ VEAEWIEQYE PGVYITLVAL HDGTRDLRRV RFSRRRFGEH QAETWWSENR EKVYEKYNVR VSEKSTASQT HRDRDEEEED
1101: IPH

Arabidopsis Description

PRAF1PH, RCC1 and FYVE domains-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q947D2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.