Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G581400.1 | Wheat | cytosol | 98.32 | 98.32 |
| TraesCS2D01G589800.1 | Wheat | cytosol | 98.13 | 98.13 |
| Os04t0686200-01 | Rice | plasma membrane | 80.75 | 81.74 |
| EES13137 | Sorghum | cytosol | 79.53 | 79.98 |
| Zm00001d002876_P001 | Maize | mitochondrion | 77.48 | 76.26 |
| HORVU3Hr1G108180.1 | Barley | mitochondrion | 11.59 | 74.25 |
| KRH08750 | Soybean | cytosol | 36.17 | 60.75 |
| GSMUA_Achr8P07850_001 | Banana | cytosol | 57.85 | 56.02 |
| KRG91629 | Soybean | cytosol | 57.01 | 55.56 |
| KRH35179 | Soybean | cytosol | 57.76 | 55.18 |
| VIT_18s0166g00210.t01 | Wine grape | cytosol | 57.85 | 54.83 |
| CDY70949 | Canola | cytosol | 18.13 | 54.8 |
| AT5G42140.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 55.05 | 54.64 |
| PGSC0003DMT400002081 | Potato | cytosol | 57.48 | 54.62 |
| Solyc04g071040.2.1 | Tomato | cytosol | 57.29 | 54.44 |
| TraesCS1B01G024400.1 | Wheat | cytosol, mitochondrion, nucleus | 45.98 | 54.24 |
| Bra016214.1-P | Field mustard | cytosol | 53.08 | 54.1 |
| CDY47138 | Canola | cytosol | 52.9 | 54.06 |
| KRH70333 | Soybean | cytosol | 56.45 | 53.93 |
| CDX88324 | Canola | cytosol | 53.46 | 53.91 |
| CDY11586 | Canola | cytosol | 52.99 | 53.85 |
| Bra003698.1-P | Field mustard | mitochondrion | 53.74 | 53.39 |
| Bra015708.1-P | Field mustard | cytosol | 53.55 | 53.35 |
| CDX87557 | Canola | cytosol | 53.36 | 53.22 |
| TraesCS3B01G581600.2 | Wheat | cytosol | 45.14 | 52.96 |
| AT1G76950.1 | Thale cress | cytosol | 54.3 | 52.67 |
| KRH30228 | Soybean | cytosol | 20.0 | 52.58 |
| CDY48550 | Canola | cytosol | 47.94 | 52.35 |
| KRH08736 | Soybean | endoplasmic reticulum | 33.74 | 51.79 |
| GSMUA_AchrUn_... | Banana | nucleus | 55.7 | 51.69 |
| CDX68076 | Canola | cytosol | 38.5 | 49.64 |
| TraesCS1B01G384600.1 | Wheat | cytosol | 45.23 | 46.14 |
| KRH30227 | Soybean | cytosol | 18.79 | 44.57 |
| TraesCS3B01G543500.1 | Wheat | cytosol | 44.49 | 43.71 |
| TraesCS1B01G252700.2 | Wheat | cytosol | 44.67 | 43.65 |
| TraesCS7B01G090600.1 | Wheat | cytosol | 38.6 | 40.49 |
| TraesCS2B01G478900.1 | Wheat | cytosol, nucleus, peroxisome | 33.55 | 34.82 |
| TraesCS6B01G288400.1 | Wheat | cytosol | 33.55 | 33.65 |
| TraesCS6B01G180900.1 | Wheat | cytosol | 11.78 | 31.11 |
| TraesCS2B01G323100.1 | Wheat | unclear | 12.8 | 31.0 |
| TraesCS5B01G366300.1 | Wheat | mitochondrion | 11.96 | 29.22 |
| TraesCS2B01G254900.2 | Wheat | cytosol | 12.24 | 27.07 |
| TraesCS7B01G200200.1 | Wheat | cytosol | 9.72 | 26.74 |
| TraesCS3B01G347100.2 | Wheat | cytosol | 9.72 | 25.55 |
| TraesCS5B01G170800.1 | Wheat | cytosol | 11.12 | 24.79 |
| TraesCS2B01G360200.1 | Wheat | cytosol | 11.12 | 21.88 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:BRX_N | InterPro:Brevis_radix_dom |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000408 | InterPro:IPR009091 |
| InterPro:IPR011993 | InterPro:IPR013083 | InterPro:IPR013591 | InterPro:IPR017455 | PFAM:PF00415 | PFAM:PF01363 |
| PFAM:PF08381 | PFAM:PF13713 | InterPro:PH-like_dom_sf | PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 |
| PFscan:PS50178 | PFscan:PS51514 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF194 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens |
| SMART:SM00064 | SUPFAM:SSF50729 | SUPFAM:SSF50985 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS2B01G609200 | EnsemblPlants:TraesCS2B01G609200.1 |
| InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | TIGR:cd00065 | TIGR:cd13365 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:789436010..789442430
Molecular Weight (calculated)
116738.0 Da
IEP (calculated)
8.317
GRAVY (calculated)
-0.482
Length
1070 amino acids
Sequence
(BLAST)
(BLAST)
0001: MADPVVDIDK ALIALKKGTQ LLKYGRKGKP KFTPFRLSTD ESTLIWVSSN QEKSLKLASV SRVLSGQRTL VFQRFLLPEK DHLSFSLVYK DGKRSLDLIC
0101: KDKVETQVWF TCLSALVSPG KHRSQPQHTD EMRSSALSFD CGRESSLSSS STFTTDSLEN KLSSANSKDR SSGEYAYSER TDVSDMQVKS VSSSDIRVSV
0201: SSALSTSSHG SGGEDSESFG DVYVWGEVMC DTASVSGSDG NTLSPGATTD ILVPKPLESN VMLDVSYVAC GVKHAALITR QAEVFTWGEE CSGRLGHGTG
0301: TSIFQPRLLE SLSTCNVEIM ACGEFHTCAV TATGDLYTWG DGTHNAGLLG HGSTVSHWIP KRVSGPLEGL QVSTVSCGTW HTALITTSGL LYTFGDGTFG
0401: ALGHGNRETI SYPKEVESLK GLRTISVSCG VWHSAAVVEV IMTQSNASSG KLFTWGDGDK YRLGHGDRAS KLKPTCVSSL IDYNFHKSAC GHTLTIGLTT
0501: SGHMFTVGSS VYGQLGNPNN DGRYARLVED KVGGGGVVEV ACGSYHVAVL TNAGEVYTWG KGANGRLGHG DIADRKVPTL VEALRDRSVK RIACGSGFTA
0601: AICQHKWVSG MEQSQCSACR QPFGFTRKRH NCYHCGLVHC HSCSSKKALR AALSPNPGKP YRVCDSCHMK LSKVMDSGVS YSRNNIPRVP GDTKAERMDT
0701: KASRVASSTS SDMIKSLDVK AAKQAKRSDH SPQFPAILQM NDVPFIGSGD LHNAGFTVTN GYPNDPRYTS QFLRMPYLSS PSSLSSGSLE SFRDANELLK
0801: QEVQKLKEEV NSLRQQRELQ DAELKKSEAK ASEAAALAAE EASKSKAAKE VIKSLTAQVK EMAERLPAGD SDAKPPRVPY LPAGGVVSPE IGREGQKRYE
0901: PVAIHYSQTP TSVTSAWSNG LPPQAHQIGK PGDNTVPPHE NMFENFNKSR DFPATHQRTN SGMVGYRPRS EDFDRREAER FQINLQDWNT RGSGSPSNQV
1001: ESEWIEQFEP GVYLTLVTLH DGTKELKRVR FSRRRFAEHQ AESWWSDNHE KVYDKYNLRK TDRISSVLTS
0101: KDKVETQVWF TCLSALVSPG KHRSQPQHTD EMRSSALSFD CGRESSLSSS STFTTDSLEN KLSSANSKDR SSGEYAYSER TDVSDMQVKS VSSSDIRVSV
0201: SSALSTSSHG SGGEDSESFG DVYVWGEVMC DTASVSGSDG NTLSPGATTD ILVPKPLESN VMLDVSYVAC GVKHAALITR QAEVFTWGEE CSGRLGHGTG
0301: TSIFQPRLLE SLSTCNVEIM ACGEFHTCAV TATGDLYTWG DGTHNAGLLG HGSTVSHWIP KRVSGPLEGL QVSTVSCGTW HTALITTSGL LYTFGDGTFG
0401: ALGHGNRETI SYPKEVESLK GLRTISVSCG VWHSAAVVEV IMTQSNASSG KLFTWGDGDK YRLGHGDRAS KLKPTCVSSL IDYNFHKSAC GHTLTIGLTT
0501: SGHMFTVGSS VYGQLGNPNN DGRYARLVED KVGGGGVVEV ACGSYHVAVL TNAGEVYTWG KGANGRLGHG DIADRKVPTL VEALRDRSVK RIACGSGFTA
0601: AICQHKWVSG MEQSQCSACR QPFGFTRKRH NCYHCGLVHC HSCSSKKALR AALSPNPGKP YRVCDSCHMK LSKVMDSGVS YSRNNIPRVP GDTKAERMDT
0701: KASRVASSTS SDMIKSLDVK AAKQAKRSDH SPQFPAILQM NDVPFIGSGD LHNAGFTVTN GYPNDPRYTS QFLRMPYLSS PSSLSSGSLE SFRDANELLK
0801: QEVQKLKEEV NSLRQQRELQ DAELKKSEAK ASEAAALAAE EASKSKAAKE VIKSLTAQVK EMAERLPAGD SDAKPPRVPY LPAGGVVSPE IGREGQKRYE
0901: PVAIHYSQTP TSVTSAWSNG LPPQAHQIGK PGDNTVPPHE NMFENFNKSR DFPATHQRTN SGMVGYRPRS EDFDRREAER FQINLQDWNT RGSGSPSNQV
1001: ESEWIEQFEP GVYLTLVTLH DGTKELKRVR FSRRRFAEHQ AESWWSDNHE KVYDKYNLRK TDRISSVLTS
0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.