CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68076	Canola	cytosol	72.76	85.9
AT1G76950.1	Thale cress	cytosol	92.04	81.78
CDX88324	Canola	cytosol	87.14	80.49
CDX87557	Canola	cytosol	87.45	79.87
CDY70949	Canola	cytosol	25.92	71.75
KRH08736	Soybean	endoplasmic reticulum	45.61	64.13
KRH08750	Soybean	cytosol	41.22	63.42
Os01t0964800-01	Rice	mitochondrion	37.24	63.04
VIT_18s0166g00210.t01	Wine grape	cytosol	71.02	61.65
KRH30228	Soybean	cytosol	25.51	61.43
PGSC0003DMT400002081	Potato	cytosol	70.41	61.28
KRH70333	Soybean	cytosol	69.9	61.16
Solyc04g071040.2.1	Tomato	cytosol	70.2	61.1
KRH35179	Soybean	cytosol	69.8	61.07
KRG91629	Soybean	cytosol	68.27	60.93
CDY11586	Canola	cytosol	63.27	58.88
CDY47138	Canola	cytosol	62.76	58.74
TraesCS1A01G020400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	54.29	58.65
KXG34192	Sorghum	cytosol	54.49	58.55
Zm00001d011805_P001	Maize	cytosol	54.39	58.44
TraesCS1B01G024400.1	Wheat	cytosol, mitochondrion, nucleus	53.88	58.21
HORVU1Hr1G002740.1	Barley	cytosol, mitochondrion, nucleus, plastid	53.88	58.21
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	53.98	58.2
HORVU3Hr1G112690.2	Barley	cytosol, plastid	53.37	57.6
KRH30227	Soybean	cytosol	26.43	57.43
TraesCS3A01G512900.1	Wheat	cytosol	52.96	56.97
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	53.27	56.92
EES18851	Sorghum	cytosol, plastid	53.16	56.88
TraesCS3D01G522600.2	Wheat	cytosol	50.2	56.62
TraesCS3B01G581600.2	Wheat	cytosol	52.65	56.58
Os05t0106700-00	Rice	mitochondrion	53.57	55.85
Zm00001d006773_P001	Maize	cytosol	22.96	55.83
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	55.1	55.16
HORVU3Hr1G108180.1	Barley	mitochondrion	9.39	55.09
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	54.18	53.8
GSMUA_Achr8P07850_001	Banana	cytosol	57.76	51.22
Os04t0686200-01	Rice	plasma membrane	53.47	49.57
EES13137	Sorghum	cytosol	53.78	49.53
CDY66504	Canola	cytosol	41.53	49.33
CDX87986	Canola	cytosol	10.1	48.06
HORVU2Hr1G124270.22	Barley	cytosol, mitochondrion, nucleus	52.76	48.05
TraesCS2D01G589800.1	Wheat	cytosol	52.35	47.94
TraesCS2B01G609200.1	Wheat	cytosol	52.35	47.94
TraesCS2A01G581400.1	Wheat	cytosol	52.35	47.94
Zm00001d002876_P001	Maize	mitochondrion	52.96	47.75
GSMUA_AchrUn_...	Banana	nucleus	55.92	47.53
CDX85690	Canola	nucleus	48.57	44.49
CDX69686	Canola	nucleus	48.57	44.49
CDX91165	Canola	nucleus	48.47	44.27
CDY12764	Canola	cytosol	47.14	44.08
CDX85076	Canola	cytosol	46.63	44.03
CDX92532	Canola	nucleus	50.0	43.99
CDY13998	Canola	nucleus	49.8	43.73
CDX97187	Canola	nucleus	47.14	43.67
CDX88891	Canola	cytosol, mitochondrion, nucleus	49.29	42.56
CDX70876	Canola	cytosol	47.86	42.06
CDX77534	Canola	cytosol	47.04	41.49
CDY49416	Canola	cytosol	46.63	40.84
CDY28580	Canola	plasma membrane	39.08	36.69
CDY44086	Canola	plasma membrane, vacuole	39.29	36.6
CDX77871	Canola	cytosol	34.18	35.3
CDY21795	Canola	cytosol	34.39	35.21
CDY31624	Canola	cytosol	33.98	33.88
CDX87989	Canola	cytosol	33.57	32.83
CDY43762	Canola	cytosol	14.18	32.48
CDY31347	Canola	cytosol	14.08	31.65
CDX84451	Canola	cytosol	14.39	31.61
CDY39843	Canola	cytosol	12.86	31.19
CDX81201	Canola	cytosol	13.78	30.68
CDY60046	Canola	cytosol	13.98	30.58
CDY46423	Canola	cytosol	11.53	29.82
CDY16215	Canola	cytosol	11.63	29.53
CDY69131	Canola	cytosol	9.49	28.97
CDY34733	Canola	cytosol	9.8	28.66
CDX69479	Canola	cytosol	11.43	28.21
CDY44785	Canola	mitochondrion	12.35	27.94
CDY26488	Canola	cytosol	11.33	27.89
CDY40735	Canola	mitochondrion	12.04	27.0
CDY57523	Canola	cytosol	12.76	26.54
CDY43240	Canola	cytosol	12.65	26.27
CDY02190	Canola	mitochondrion	11.33	25.06
CDY51633	Canola	mitochondrion	11.22	24.77
CDX97668	Canola	cytosol	12.04	24.74
CDY56827	Canola	cytosol	12.04	24.74
CDY04192	Canola	cytosol	12.14	24.19
CDY39172	Canola	cytosol	12.14	24.19
CDX96062	Canola	plastid	12.14	22.97
CDY01845	Canola	plastid	11.94	22.63
CDY56518	Canola	cytosol, plastid	11.84	22.31
CDY28863	Canola	cytosol	11.63	21.92
CDX83586	Canola	cytosol, plastid	11.53	21.36
CDY13609	Canola	cytosol	11.43	21.17
CDX99731	Canola	cytosol, plastid	11.43	20.93
CDY40988	Canola	cytosol, plastid	11.12	19.85
CDY14709	Canola	nucleus	11.73	16.64
CDY21840	Canola	endoplasmic reticulum, extracellular	11.73	13.92
CDY20113	Canola	endoplasmic reticulum, extracellular	11.63	13.82

Protein Annotations

Gene3D:2.130.10.30	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078ICF7	UniProt:A0A078ICF7	InterPro:BRX_N
InterPro:Brevis_radix_dom	EnsemblPlants:CDY48550	ProteinID:CDY48550	ProteinID:CDY48550.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00091275001	InterPro:IPR000408	InterPro:IPR009091	InterPro:IPR013083
InterPro:IPR013591	InterPro:IPR017455	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF13713
PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870
PANTHER:PTHR22870:SF91	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50985	SUPFAM:SSF57903
UniParc:UPI0004EE1DE7	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC06g18700DBnaC06g18700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICF7]

Coordinates

chrLK032778:+:100953..108717

Molecular Weight (calculated)

106447.0 Da

IEP (calculated)

7.652

GRAVY (calculated)

-0.449

Length

980 amino acids

Sequence
(BLAST)

001: MCTQKRLVLK PFNNIICKDK VEAEVWIGGL KTLISGGQGG RSKIDGWSGG NISVDASRDV TSSSQSSSSA SASQGHSSPG TPFNFDPVPS PKSTEPEKSH
101: VALDTKMMQT KVSGSDGFRV SVSSAQSSSS HGSGADDSDA LGDVYIWGEV ICDNVVKVGI DKNASYLTTR TDVLVPKPLE SNIVLDVHQI ACGVRHAAFV
201: TRQGEVFTWG EESGGRLGHG IGKDVFHPRL VESLTACDFV ACGEFHTCAV TLSGELYTWG DGTHNVGLLG HGSDVSHWIP KRIAGPLEGL HVASVTCGPW
301: HTALVTSHGR LFTFGDGTFG ALGHGDKETV QYPREVESLS GLRTIAVSCG VWHTAAVVEI IVTQSNSSSV SSGKLFTWGD GDKNRLGHGD KDPRLKPTCV
401: PALIDYNFHK IACGHSLTVG LTTSGQVFTM GSTVYGQLGN VQTDGKLPCL VEDKLASEFV EEISCGAYHV AALTSRNEVY TWGKGANGRL GHGDLEDRKV
501: PTLVEALKDR HVKYVACGSN YTAAICLHKW VSGAEQSQCS SCRLAFGFTR KRHNCYNCGL VHCHSCSSKK AFRAALAPSA GRLYRVCDSC YVKLSKVSEI
601: SETTSRRNSV VPRLSGENKD RLDKSEIRLA KFGASNMDLI KQLDSKAAKQ GKKSDNFALG RNSQLPSLMQ LKDAAPSGIN SRSVSPFSRR SSPPRSATPM
701: PSTSGIYFPV GVADNMKKTN EILNQEIIKL RTQVDSLTQK CELQEVELKN SVKKTQEALA LAEEESAKSR AAKEAIKSLI AQLKDVAEKL PPGESIKLGL
801: DQNGFHFPEE NGFHSSRSES MTSSISSVAP FDFAFANSSW SNLQSPKHTP RAGERNNNNN TAYPLDPRLS SSGSVISERH EPFQFHNNGS SQAGADNNTD
901: QVEAEWIEQY EPGVYITLVA LHDGTRDLRR VRFSRRRFGE HQAETWWSEN REKVYEKYNV RVSEKPTASQ TDRDEEDVTQ

Best Arabidopsis Sequence Match ( AT1G76950.1 )
(BLAST)

0001: MADLVTYSNA DHNLEQALIT LKKGTQLLKY GRKGKPKFYP FRLSSDEKSL IWISSSGEKR LKLASVSKIV PGQRTAVFQR YLRPEKDYLS FSLLYNGKKK
0101: SLDLICKDKV EAEIWIGGLK TLISTGQGGR SKIDGWSGGG LSVDASRELT SSSPSSSSAS ASRGHSSPGT PFNIDPITSP KSAEPEVPPT DSEKSHVALD
0201: NKNMQTKVSG SDGFRVSVSS AQSSSSHGSA ADDSDALGDV YIWGEVICDN VVKVGIDKNA SYLTTRTDVL VPKPLESNIV LDVHQIACGV RHAAFVTRQG
0301: EIFTWGEESG GRLGHGIGKD VFHPRLVESL TATSSVDFVA CGEFHTCAVT LAGELYTWGD GTHNVGLLGH GSDISHWIPK RIAGSLEGLH VASVSCGPWH
0401: TALITSYGRL FTFGDGTFGV LGHGDKETVQ YPREVESLSG LRTIAVSCGV WHTAAVVEII VTQSNSSSVS SGKLFTWGDG DKNRLGHGDK DPRLKPTCVP
0501: ALIDYNFHKI ACGHSLTVGL TTSGQVFTMG STVYGQLGNL QTDGKLPCLV EDKLASEFVE EISCGAYHVA ALTSRNEVYT WGKGANGRLG HGDLEDRKVP
0601: TIVEALKDRH VKYIACGSNY TAAICLHKWV SGAEQSQCST CRLAFGFTRK RHNCYNCGLV HCHSCSSKKA FRAALAPSAG RLYRVCDSCY VKLSKVSEIN
0701: DTNRRNSAVP RLSGENRDRL DKSEIRLAKF GTSNMDLIKQ LDSKAAKQGK KTDTFSLGRN SQLPSLLQLK DAVQSNIGDM RRATPKLAQA PSGISSRSVS
0801: PFSRRSSPPR SATPMPSTSG LYFPVGIADN MKKTNEILNQ EIVKLRTQVD SLTQKCEFQE VELQNSVKKT QEALALAEEE SAKSRAAKEA IKSLIAQLKD
0901: VAEKLPPGES VKLACLQNGL DQNGFHFPEE NGFHPSRSES MTSSISSVAP FDFAFANASW SNLQSPKQTP RASERNSNAY PADPRLSSSG SVISERIEPF
1001: QFQNNSDNGS SQTGVNNTNQ VEAEWIEQYE PGVYITLVAL HDGTRDLRRV RFSRRRFGEH QAETWWSENR EKVYEKYNVR VSEKSTASQT HRDRDEEEED
1101: IPH

Arabidopsis Description

PRAF1PH, RCC1 and FYVE domains-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q947D2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.