CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016304.1-P	Field mustard	cytosol	95.25	97.83
CDY69131	Canola	cytosol	78.63	92.83
CDY16215	Canola	cytosol	84.43	82.9
AT1G27060.1	Thale cress	cytosol	79.68	78.24
VIT_01s0026g01520.t01	Wine grape	cytosol	59.1	56.57
Solyc05g006940.2.1	Tomato	cytosol	55.94	53.81
PGSC0003DMT400045467	Potato	cytosol	56.2	53.65
GSMUA_Achr6P29750_001	Banana	cytosol	53.3	50.88
Os01t0777800-01	Rice	cytosol	50.66	47.88
TraesCS3D01G312300.1	Wheat	cytosol	50.13	46.68
TraesCS3B01G347100.2	Wheat	cytosol	49.87	46.44
OQU87663	Sorghum	cytosol	49.08	46.04
CDY14709	Canola	nucleus	83.38	45.73
TraesCS3A01G319000.1	Wheat	cytosol	49.34	45.61
Zm00001d043280_P001	Maize	cytosol	49.08	45.59
HORVU3Hr1G076310.2	Barley	cytosol, mitochondrion, nucleus	49.87	41.63
KRH74759	Soybean	nucleus	60.42	40.67
KRH69375	Soybean	nucleus	60.95	39.09
CDY26488	Canola	cytosol	26.91	25.63
CDX69479	Canola	cytosol	26.65	25.44
CDY34733	Canola	cytosol	22.43	25.37
CDY40735	Canola	mitochondrion	27.97	24.26
CDY44785	Canola	mitochondrion	27.7	24.25
CDY43762	Canola	cytosol	26.65	23.6
CDX84451	Canola	cytosol	26.65	22.65
CDY60046	Canola	cytosol	26.12	22.1
CDX81201	Canola	cytosol	25.07	21.59
CDY31347	Canola	cytosol	24.54	21.33
CDY39843	Canola	cytosol	22.69	21.29
CDY02190	Canola	mitochondrion	22.16	18.96
CDY51633	Canola	mitochondrion	22.16	18.92
CDY57523	Canola	cytosol	23.22	18.68
CDY43240	Canola	cytosol	23.22	18.64
CDX97668	Canola	cytosol	22.96	18.24
CDY56827	Canola	cytosol	22.43	17.82
CDY39172	Canola	cytosol	21.9	16.87
CDY04192	Canola	cytosol	21.9	16.87
CDY01845	Canola	plastid	21.9	16.05
CDY28863	Canola	cytosol	21.9	15.96
CDX96062	Canola	plastid	21.64	15.83
CDX99731	Canola	cytosol, plastid	22.16	15.7
CDY13609	Canola	cytosol	21.9	15.69
CDY56518	Canola	cytosol, plastid	21.37	15.58
CDX83586	Canola	cytosol, plastid	21.37	15.31
CDY66504	Canola	cytosol	32.98	15.15
CDY40988	Canola	cytosol, plastid	21.64	14.94
CDX87986	Canola	cytosol	7.39	13.59
CDX97187	Canola	nucleus	34.83	12.48
CDX69686	Canola	nucleus	34.56	12.24
CDX85690	Canola	nucleus	34.56	12.24
CDX85076	Canola	cytosol	33.51	12.24
CDX77871	Canola	cytosol	30.61	12.22
CDY21795	Canola	cytosol	30.61	12.12
CDX91165	Canola	nucleus	34.3	12.12
CDY28580	Canola	plasma membrane	32.72	11.88
CDY12764	Canola	cytosol	32.72	11.83
CDY44086	Canola	plasma membrane, vacuole	32.72	11.79
CDX92532	Canola	nucleus	34.56	11.76
CDY13998	Canola	nucleus	34.3	11.65
CDX88891	Canola	cytosol, mitochondrion, nucleus	34.83	11.63
CDY48550	Canola	cytosol	29.82	11.53
CDX70876	Canola	cytosol	33.51	11.39
CDX77534	Canola	cytosol	32.98	11.25
CDX88324	Canola	cytosol	31.13	11.12
CDX87557	Canola	cytosol	31.4	11.09
CDY49416	Canola	cytosol	32.72	11.08
CDY70949	Canola	cytosol	10.29	11.02
CDY31624	Canola	cytosol	28.5	10.99
CDY20113	Canola	endoplasmic reticulum, extracellular	23.75	10.91
CDX87989	Canola	cytosol	28.23	10.68
CDY21840	Canola	endoplasmic reticulum, extracellular	23.22	10.65
CDY11586	Canola	cytosol	29.02	10.45
CDY47138	Canola	cytosol	28.76	10.41
CDX68076	Canola	cytosol	14.51	6.63

Protein Annotations

EnsemblPlants:CDY46423	EnsemblPlantsGene:GSBRNA2T00083972001	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PFAM:PF00415	PFscan:PS50012	PRINTS:PR00633	ProteinID:CDY46423	ProteinID:CDY46423.1
ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI0004EE9BF3	UniProt:A0A078IAZ1	MapMan:35.1

Description

BnaA08g20070DBnaA08g20070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IAZ1]

Coordinates

chrLK032666:-:62028..63843

Molecular Weight (calculated)

40009.8 Da

IEP (calculated)

5.041

GRAVY (calculated)

-0.187

Length

379 amino acids

Sequence
(BLAST)

001: MSELNEAPSP ADEEQVWSWG AGTDGQLGTA KLQDEHLPQL LSLTSLPSIS MLACGGAHVI ALTSGGKVFT WGRGNSGQLG HGDNLNASLP KPLFFFDDDY
101: VISQASAGWS HSAFVSDSGS LFTCGNGSFG QLGLGDNISL TSPAKVSYFV DKSVKMVACG MRHSLVLFSG NQVCGFGSGK RGQLGVSSER TKSVNLPCVV
201: SGLEDVEVVR IAANGDHSAA LSANGELFTW GRGFCGSPDV QTPQCLPSYE SFRDVALGWN HALLLTVDGK VFKLGNTLDK QSEKQQLQEG SSETLLEKVH
301: GFDGVKVVQI AAGAEHSAAV TESGEVQTWG WGEHGQLGLG DTNDQTNPQL VSLGSGDLQT KETKVYCGSG FTYVVRRKQ

Best Arabidopsis Sequence Match ( AT1G27060.1 )
(BLAST)

001: MAEHGETQAD EEEEEQVWSW GAGTDGQLGT TKLQDELLPQ LLSLTSLPSI SMLACGGAHV IALTSGGKVF TWGRGSSGQL GHGDILNITL PKLVSFFDDS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS

Arabidopsis Description

At1g27060 [Source:UniProtKB/TrEMBL;Acc:A2RVN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.