CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036349.1-P	Field mustard	cytosol, plastid	99.09	99.09
CDX99731	Canola	cytosol, plastid	92.35	94.77
CDY04192	Canola	cytosol	81.24	90.65
CDY39172	Canola	cytosol	81.06	90.45
CDY13609	Canola	cytosol	86.34	89.6
CDX83586	Canola	cytosol, plastid	85.79	89.04
AT3G26100.5	Thale cress	cytosol, plastid	83.24	85.9
KRG97505	Soybean	cytosol	76.68	78.69
VIT_01s0137g00230.t01	Wine grape	cytosol	75.96	78.09
KRH31377	Soybean	cytosol	74.86	77.4
Solyc05g014030.2.1	Tomato	cytosol	73.22	75.42
PGSC0003DMT400027900	Potato	cytosol	73.22	75.42
Os12t0284000-01	Rice	cytosol	73.04	75.09
GSMUA_AchrUn_...	Banana	cytosol, plastid	72.68	74.3
HORVU5Hr1G034530.6	Barley	cytosol	71.95	73.97
GSMUA_Achr9P02110_001	Banana	plastid	70.31	71.75
KRH59226	Soybean	cytosol	69.76	71.72
PGSC0003DMT400016865	Potato	cytosol, extracellular, plastid	21.68	68.79
TraesCS5D01G123500.1	Wheat	mitochondrion, plastid	26.78	65.92
CDX96062	Canola	plastid	59.56	63.13
CDY28863	Canola	cytosol	59.74	63.08
CDY01845	Canola	plastid	59.38	63.06
CDY56518	Canola	cytosol, plastid	59.02	62.31
CDY56827	Canola	cytosol	23.13	26.62
CDX97668	Canola	cytosol	22.95	26.42
CDX69479	Canola	cytosol	18.76	25.94
CDY26488	Canola	cytosol	18.58	25.63
CDY34733	Canola	cytosol	14.94	24.48
CDY43762	Canola	cytosol	18.21	23.36
CDY69131	Canola	cytosol	13.48	23.05
CDX81201	Canola	cytosol	18.21	22.73
CDX84451	Canola	cytosol	18.4	22.65
CDY60046	Canola	cytosol	18.4	22.54
CDY31347	Canola	cytosol	17.85	22.48
CDY46423	Canola	cytosol	14.94	21.64
CDY39843	Canola	cytosol	15.48	21.04
CDY16215	Canola	cytosol	14.75	20.98
CDY57523	Canola	cytosol	16.94	19.75
CDY43240	Canola	cytosol	16.94	19.7
CDY40735	Canola	mitochondrion	15.12	18.99
CDY44785	Canola	mitochondrion	14.94	18.94
CDY02190	Canola	mitochondrion	14.94	18.51
CDY51633	Canola	mitochondrion	14.94	18.47
CDY70949	Canola	cytosol	10.38	16.1
CDY20113	Canola	endoplasmic reticulum, extracellular	23.5	15.64
CDY21840	Canola	endoplasmic reticulum, extracellular	23.32	15.5
CDY66504	Canola	cytosol	21.86	14.55
CDX77871	Canola	cytosol	21.86	12.64
CDY21795	Canola	cytosol	21.86	12.54
CDY47138	Canola	cytosol	22.77	11.94
CDY11586	Canola	cytosol	22.77	11.87
CDY14709	Canola	nucleus	14.94	11.87
CDX88324	Canola	cytosol	22.59	11.69
CDY28580	Canola	plasma membrane	22.22	11.69
CDY44086	Canola	plasma membrane, vacuole	22.22	11.6
CDX97187	Canola	nucleus	22.22	11.53
CDX69686	Canola	nucleus	22.4	11.5
CDX85076	Canola	cytosol	21.68	11.46
CDX87557	Canola	cytosol	22.4	11.46
CDY12764	Canola	cytosol	21.86	11.45
CDX85690	Canola	nucleus	22.22	11.4
CDX91165	Canola	nucleus	22.22	11.37
CDX88891	Canola	cytosol, mitochondrion, nucleus	23.13	11.19
CDX92532	Canola	nucleus	22.59	11.13
CDY48550	Canola	cytosol	19.85	11.12
CDX70876	Canola	cytosol	22.4	11.03
CDY13998	Canola	nucleus	22.22	10.93
CDY31624	Canola	cytosol	19.49	10.88
CDX87989	Canola	cytosol	19.67	10.78
CDY49416	Canola	cytosol	21.86	10.72
CDX77534	Canola	cytosol	21.49	10.62
CDX87986	Canola	cytosol	3.28	8.74
CDX68076	Canola	cytosol	11.29	7.47

Protein Annotations

EnsemblPlants:CDY40988	EnsemblPlantsGene:GSBRNA2T00072263001	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	PFAM:PF00415	PFscan:PS50012	PRINTS:PR00633
ProteinID:CDY40988	ProteinID:CDY40988.1	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI0004EDD00C
UniProt:A0A078HW25	MapMan:35.1	:	:	:	:

Description

BnaA02g27780DBnaA02g27780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HW25]

Coordinates

chrLK032487:+:131984..135019

Molecular Weight (calculated)

58882.9 Da

IEP (calculated)

7.182

GRAVY (calculated)

-0.178

Length

549 amino acids

Sequence
(BLAST)

001: MDATTSGTQS LHCHNLPDQP VSSAAASPPV TPFQRQKRQC FGDSTPGEFP LAANPSIVLH VLTECRLNPR DLANLEATCS FFSQPANFAP DCSLSLPELA
101: ALDMCNKRMI FKPMSEQERE EMKRRCGGSW KLVLRFLLAG EACCRREKSQ AIAGPGHSIA VTSKGQVYTF GHNNSGQLGH GHTDEEARIL PIRSLQGTII
201: IQAAAGAGRT MLISDNGSVY SCGKDLFGEA EYGGQGGSRQ VTTPQLVTSL KNIFVVQAAI GNFFTAVLSR EGKVYTFSWG SDGRLGHQTE ANDVEPRPLL
301: GSLENVPVVQ IAAGYCYLLA LVCQPNGMSV YSVGCGLGGK LGHGSKTDEK YPRVIEQFQL LNFQPRVVAA GAWHAAVVGQ DGRVCTWGWG RYGCLGHGNE
401: EGESVPKVVE GLSHVKAVHV ATGDYTTFVV SEDGDVYSFG CGESASLGHH TAVFEQRDRQ ANVLSPAVVT SLKQVKERVV QISLTNSIYW NAHTFALTES
501: GKLFAFGAGD KGQLGAELGR DQTESLTLGK RKEIAFFNLV GSLYKGGGT

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.