Factsheet for PGSC0003DMT400016865

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G123500.1	Wheat	mitochondrion, plastid	46.24	35.87
PGSC0003DMT400027900	Potato	cytosol	81.5	26.45
Solyc05g014030.2.1	Tomato	cytosol	80.92	26.27
CDY39172	Canola	cytosol	70.52	24.8
CDY04192	Canola	cytosol	69.36	24.39
VIT_01s0137g00230.t01	Wine grape	cytosol	73.99	23.97
KRH31377	Soybean	cytosol	72.83	23.73
HORVU5Hr1G034530.6	Barley	cytosol	72.83	23.6
Os12t0284000-01	Rice	cytosol	72.25	23.41
KRG97505	Soybean	cytosol	72.25	23.36
CDY13609	Canola	cytosol	71.1	23.25
CDX83586	Canola	cytosol, plastid	71.1	23.25
Bra025182.1-P	Field mustard	cytosol	71.1	23.25
AT3G26100.5	Thale cress	cytosol, plastid	71.1	23.12
GSMUA_AchrUn_...	Banana	cytosol, plastid	70.52	22.72
GSMUA_Achr9P02110_001	Banana	plastid	70.52	22.68
Bra017335.1-P	Field mustard	cytosol	69.36	22.6
CDX99731	Canola	cytosol, plastid	69.36	22.43
CDY40988	Canola	cytosol, plastid	68.79	21.68
Bra036349.1-P	Field mustard	cytosol, plastid	68.79	21.68
KRH59226	Soybean	cytosol	65.9	21.35
PGSC0003DMT400003817	Potato	cytosol	27.75	12.57
PGSC0003DMT400032346	Potato	plasma membrane	28.9	10.37
PGSC0003DMT400032945	Potato	extracellular	19.65	8.7
PGSC0003DMT400045467	Potato	cytosol	19.08	8.31
PGSC0003DMT400003726	Potato	cytosol	21.97	8.15
PGSC0003DMT400059356	Potato	cytosol	26.01	4.36
PGSC0003DMT400034994	Potato	cytosol	23.7	3.96
PGSC0003DMT400043094	Potato	nucleus	23.7	3.81
PGSC0003DMT400002081	Potato	cytosol	23.12	3.55
PGSC0003DMT400001620	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400016865	EnsemblPlantsGene:PGSC0003DMG400006598	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	PFAM:PF00415	PFscan:PS50012	PGSC:PGSC0003DMG400006598
SEG:seg	SUPFAM:SSF50985	UniParc:UPI0002956DDB	UniProt:M1A891	MapMan:35.2	:

Description

RCC1 and BTB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006598]

Coordinates

chr1:+:24326408..24330701

Molecular Weight (calculated)

18620.3 Da

IEP (calculated)

5.570

GRAVY (calculated)

0.139

Length

173 amino acids

Sequence
(BLAST)

001: MVYTFSWGNE TKLGHQTEQT DLELFPLLGA LDNIPVVQSA AGYCYLLALA CQPSGMSVYF VGCGLGGKLG HGTRTEEEVS STPCCIRGIP PGRDIIEQFQ
101: TLNIQLVVVA AGAWHAAIVG KDGRVCTWGW GRYGCLGHGN EDCESAPKVV KALSNVKVVY VATWDYTTFV VSN

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.